SMTL ID : 8cvh.1

Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and 6-OH-hyoscyamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: Y.186, T.297, I.298, E.299, P.300, A.301 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.297, A:E.299, A:P.300 Water bridges: A:Y.186 EDO.2: 6 residues within 4Å: Chain A: E.90, K.93, L.94, P.148, E.149, K.150 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.149, A:K.150, A:K.150 Water bridges: A:E.149, A:R.155 EDO.3: 6 residues within 4Å: Chain A: R.24, A.25, E.26, V.29, W.242, R.274 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.24, A:E.26, A:R.274, A:R.274 EDO.7: 2 residues within 4Å: Chain A: E.123, A.124 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.18, A:A.124 EDO.10: 6 residues within 4Å: Chain A: K.102, F.103, V.115, E.116, G.117 Ligands: FMT.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.103, A:G.117, A:G.117

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 4 residues within 4Å: Chain A: F.17, K.129, D.130, P.203 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.129 FMT.5: 2 residues within 4Å: Chain A: D.140, V.144 No protein-ligand interaction detected (PLIP) FMT.6: 7 residues within 4Å: Chain A: G.117, E.118, Q.119, L.326, S.327, K.329 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.119 FMT.11: 1 residues within 4Å: Chain A: D.78 No protein-ligand interaction detected (PLIP) FMT.12: 2 residues within 4Å: Chain A: K.81, A.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.81 FMT.13: 4 residues within 4Å: Chain A: E.70, M.73, A.74, T.250 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.74

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.8: 9 residues within 4Å: Chain A: Y.202, H.217, L.226, L.233, H.273, V.275, R.283, S.285 Ligands: V.14 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.275 Hydrogen bonds: A:N.200, A:Y.202, A:S.285 Salt bridges: A:H.217, A:H.273, A:R.283

1 x OVR: (1R,3S,5R,6S)-6-hydroxy-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-3-hydroxy-2-phenylpropanoate(Non-covalent)

OVR.9: 13 residues within 4Å: Chain A: F.103, L.107, E.116, M.196, S.214, H.217, G.220, N.221, F.289, Y.318, Y.325, L.326 Ligands: V.14 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.103, A:L.107, A:Y.325, A:L.326 Water bridges: A:E.116, A:N.200, A:F.289 Salt bridges: A:E.116

1 x V: VANADIUM ION(Non-covalent)

V.14: 5 residues within 4Å: Chain A: H.217, D.219, H.273 Ligands: SIN.8, OVR.9 No protein-ligand interaction detected (PLIP)

2 x SR: STRONTIUM ION(Non-functional Binders)

SR.15: 3 residues within 4Å: Chain A: E.92, Q.95, G.98 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.92, A:E.92, A:G.98, H2O.4 SR.16: 1 residues within 4Å: Chain A: N.145 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:N.145, H2O.3, H2O.3, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wenger, E.S. et al., Structure of the L289F H6H cyclization ferryl-mimicking complex. To Be Published

Release Date

2023-11-22

Peptides

Hyoscyamine 6-beta-hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hyoscyamine 6-beta-hydroxylase

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