SMTL ID : 8d5j.1

The complex of Pre-mRNA-Processing Factor 19 (Prpf19) neoantigen KYLQVASHV Presented by H2-Kd

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- TYR- LEU- GLN- VAL- ALA- SER- HIS- VAL: Pre-mRNA-processing factor 19(Non-covalent)

LYS-TYR-LEU-GLN-VAL-ALA-SER-HIS-VAL.1: 30 residues within 4Å: Chain A: L.6, Y.8, V.10, F.23, A.25, Y.60, E.63, Q.64, R.67, S.70, D.71, W.74, V.77, S.78, T.81, Y.85, R.98, F.100, F.117, T.144, K.147, W.148, A.151, D.153, Y.156, Y.157, Y.160, E.164, W.168, Y.172 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:Y.8, A:V.10, A:A.25, A:R.67, A:D.71, A:W.74, A:T.81, A:F.117, A:Y.157, A:Y.160, A:Y.160 Hydrogen bonds: A:Y.8, A:E.63, A:Q.64, A:R.67, A:S.70, A:D.71, A:D.71, A:D.71, A:Y.85, A:R.98, A:R.98, A:D.153, A:Y.157, A:Y.160, A:Y.172, A:Y.172 Water bridges: A:W.74, A:S.78, A:Y.156, A:Y.156, A:Y.157, A:Y.157 Salt bridges: A:K.147 pi-Stacking: A:F.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Custodio, J.M.F. et al., The complex of Pre-mRNA-Processing Factor 19 (Prpf19) neoantigen KYLQVASHV Presented by H2-Kd. To Be Published

Release Date

2022-07-06

Peptides

MHC class I heavy chain maturation peptide H-2K(D): A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I heavy chain maturation peptide H-2K(D)

Beta-2-microglobulin

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