SMTL ID : 8d6a.1

Cryo-EM structure of human LIF signaling complex: model containing the interaction core region

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain B: H.204, N.205 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain C: N.363, T.378, I.379, L.380 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain C: E.360, N.382, T.384 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain C: N.259 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain C: F.173, N.199 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain B: N.109, S.111 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain B: T.319, Y.322, N.368 No protein-ligand interaction detected (PLIP) NAG.8: 4 residues within 4Å: Chain B: N.135, K.151, R.154, E.179 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.151 Hydrogen bonds: B:R.154 NAG.9: 2 residues within 4Å: Chain B: L.342, N.361 No protein-ligand interaction detected (PLIP) NAG.10: 1 residues within 4Å: Chain B: N.357 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Structural insights into the assembly of gp130 family cytokine signaling complexes. Sci Adv (2023)

Release Date

2023-03-29

Peptides

Leukemia inhibitory factor: A
Interleukin-6 receptor subunit beta: B
Leukemia inhibitory factor receptor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

Leukemia inhibitory factor

Interleukin-6 receptor subunit beta

Leukemia inhibitory factor receptor

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