SMTL ID : 8d7r.1

Cryo-EM structure of human CLCF1 signaling complex: model containing the interaction core region

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: E.89, H.167, N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain C: S.330, N.363 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain C: R.258, N.259 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain C: V.197, N.199 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain D: N.205 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 3 residues within 4Å: Chain B: N.120, T.122, S.160 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.122 Hydrogen bonds: B:S.160 NAG.7: 3 residues within 4Å: Chain C: N.382, T.384, E.385 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.385 NAG.8: 1 residues within 4Å: Chain D: N.109 No protein-ligand interaction detected (PLIP) NAG.9: 4 residues within 4Å: Chain D: E.133, N.135, K.151, E.179 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.135, D:K.151 NAG.10: 4 residues within 4Å: Chain D: K.340, I.341, L.342, N.361 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.340, D:K.340 NAG.11: 3 residues within 4Å: Chain D: E.345, N.357, K.386 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:E.345 Hydrogen bonds: D:N.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Structural insights into the assembly of gp130 family cytokine signaling complexes. Sci Adv (2023)

Release Date

2023-03-29

Peptides

Cardiotrophin-like cytokine factor 1: A
Ciliary neurotrophic factor receptor subunit alpha: B
Leukemia inhibitory factor receptor: C
Interleukin-6 receptor subunit beta: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

C
B

D
A

Cardiotrophin-like cytokine factor 1

Ciliary neurotrophic factor receptor subunit alpha

Leukemia inhibitory factor receptor

Interleukin-6 receptor subunit beta

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