SMTL ID : 8d85.1

Cryo-EM structure of human IL-27 signaling complex: model containing the interaction core region

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain C: Y.10, V.12, N.19, W.57 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain D: V.25, I.60, N.61, A.64 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain D: N.21, T.70 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 6 residues within 4Å: Chain A: T.45, R.47, N.85, T.87, S.96, F.98 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.45 NAG.5: 3 residues within 4Å: Chain C: Q.39, S.43, N.44 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.39, C:N.44 NAG.6: 1 residues within 4Å: Chain D: N.205 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain D: N.135, E.179 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.179 NAG.8: 1 residues within 4Å: Chain D: N.109 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Structural insights into the assembly of gp130 family cytokine signaling complexes. Sci Adv (2023)

Release Date

2023-03-29

Peptides

Interleukin-27 subunit beta: A
Interleukin-27 subunit alpha: B
Interleukin-27 receptor subunit alpha: C
Interleukin-6 receptor subunit beta: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

D
B

Interleukin-27 subunit beta

Interleukin-27 subunit alpha

Interleukin-27 receptor subunit alpha

Interleukin-6 receptor subunit beta

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