SMTL ID : 8do1.1

Cryo-EM structure of the human Sec61 complex inhibited by ipomoeassin F

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-mer
Ligands
1 x SXF: [(1~{S},3~{R},4~{S},5~{R},6~{R},8~{R},10~{S},23~{R},24~{R},25~{R},26~{R})-5-acetyloxy-6-methyl-4,26-bis(oxidanyl)-17,20-bis(oxidanylidene)-10-pentyl-24-[(~{E})-3-phenylprop-2-enoyl]oxy-2,7,9,21,27-pentaoxatricyclo[21.3.1.0^{3,8}]heptacosan-25-yl] (~{E})-2-methylbut-2-enoate(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Itskanov, S. et al., A common mechanism of Sec61 translocon inhibition by small molecules. Nat.Chem.Biol. (2023)
Release Date
2023-05-24
Peptides
Protein transport protein Sec61 subunit alpha isoform 1: A
Protein transport protein Sec61 subunit gamma: B
Protein transport protein Sec61 subunit beta: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
Membrane
We predict this structure to be a membrane protein.

Protein transport protein Sec61 subunit alpha isoform 1

Protein transport protein Sec61 subunit gamma

Protein transport protein Sec61 subunit beta

Related Entries With Identical Sequence

2wwb.1 | 3j7q.1 | 3j7r.45 | 4cg5.1 | 4cg6.1 | 4cg7.1 | 6w6l.1 | 6z3t.1 | 7tm3.1 | 7tut.1 | 7zl3.1 | 8b5l.1 | 8b6c.1 | 8b6l.1 | 8btk.47 | 8btk.48 | 8dnv.1 | 8dnw.1 | 8dnx.1 | 8dny.1 | 8dnz.1 | 8do0.1 | 8do2.1 | 8do3.1 | 8oj0.1 | 8oj8.1 | 8rjb.1 | 8rjc.1 | 8rjd.1