SMTL ID : 6z3t.1

Structure of canine Sec61 inhibited by mycolactone

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x Q6B: [(6~{S},7~{S},9~{Z},12~{R})-12-[(~{Z},2~{S},6~{R},7~{R},9~{R})-4,6-dimethyl-7,9-bis(oxidanyl)dec-4-en-2-yl]-7,9-dimethyl-2-oxidanylidene-1-oxacyclododec-9-en-6-yl] (2~{E},4~{E},6~{E},8~{E},10~{E},12~{S},13~{S},15~{S})-4,6,10-trimethyl-12,13,15-tris(oxidanyl)hexadeca-2,4,6,8,10-pentaenoate(Non-covalent)

Q6B.1: 4 residues within 4Å: Chain A: V.85, T.86, L.89, W.379 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.85, A:T.86, A:L.89, A:W.379

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerard, S.F. et al., Structure of the Inhibited State of the Sec Translocon. Mol.Cell (2020)

Release Date

2020-07-22

Peptides

Protein transport protein Sec61 subunit alpha isoform 1: A
Protein transport protein Sec61 subunit gamma: B
Protein transport protein Sec61 subunit beta: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Protein transport protein Sec61 subunit alpha isoform 1

Protein transport protein Sec61 subunit gamma

Protein transport protein Sec61 subunit beta

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