- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-8-mer
- Ligands
- 10 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 9 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 14 residues within 4Å:- Chain A: G.13, T.14, G.15, Y.16, G.187, D.188, E.242, G.334, G.335, S.336, L.338, F.339, R.383
- Ligands: MG.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:T.14, A:G.15, A:Y.16, A:D.188, A:D.188, A:E.242, A:G.335
- Salt bridges: A:K.18, A:R.383
ADP.6: 15 residues within 4Å:- Chain H: G.13, S.14, G.15, L.16, K.18, G.156, D.157, K.213, E.214, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.5
10 PLIP interactions:10 interactions with chain H- Hydrogen bonds: H:S.14, H:G.15, H:L.16, H:D.157, H:D.157, H:D.157, H:K.213, H:G.302, H:T.303
- Salt bridges: H:K.18
ADP.8: 14 residues within 4Å:- Chain I: G.13, S.14, G.15, L.16, K.18, G.156, D.157, K.213, E.214, G.302, T.303, Y.306, K.336
- Ligands: MG.7
11 PLIP interactions:11 interactions with chain I- Hydrogen bonds: I:S.14, I:G.15, I:L.16, I:L.16, I:D.157, I:D.157, I:K.213, I:K.213, I:E.214, I:G.302
- Salt bridges: I:K.18
ADP.10: 16 residues within 4Å:- Chain J: G.13, S.14, G.15, L.16, K.18, G.156, D.157, R.210, K.213, E.214, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.9
13 PLIP interactions:13 interactions with chain J- Hydrogen bonds: J:S.14, J:G.15, J:L.16, J:D.157, J:D.157, J:D.157, J:K.213, J:E.214, J:G.302, J:M.305
- Salt bridges: J:K.18, J:K.18, J:K.336
ADP.12: 16 residues within 4Å:- Chain K: G.13, S.14, G.15, L.16, K.18, G.156, D.157, R.210, K.213, E.214, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.11
13 PLIP interactions:13 interactions with chain K- Hydrogen bonds: K:S.14, K:G.15, K:L.16, K:L.16, K:D.157, K:D.157, K:K.213, K:E.214, K:G.302
- Salt bridges: K:K.18, K:K.18, K:K.336
- pi-Stacking: K:Y.306
ADP.14: 17 residues within 4Å:- Chain L: D.11, G.13, S.14, L.16, K.18, G.156, D.157, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.13
10 PLIP interactions:10 interactions with chain L- Hydrogen bonds: L:S.14, L:L.16, L:D.157, L:D.157, L:D.157, L:K.213, L:G.302, L:M.305
- Salt bridges: L:K.18, L:K.18
ADP.16: 15 residues within 4Å:- Chain M: G.13, S.14, G.15, L.16, K.18, G.156, D.157, K.213, E.214, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.15
13 PLIP interactions:13 interactions with chain M- Hydrogen bonds: M:S.14, M:G.15, M:L.16, M:D.157, M:D.157, M:K.213, M:E.214, M:G.302, M:T.303, M:K.336
- Salt bridges: M:K.18, M:K.18
- pi-Stacking: M:Y.306
ADP.18: 16 residues within 4Å:- Chain N: D.11, G.13, S.14, G.15, L.16, K.18, G.156, D.157, G.182, K.213, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.17
11 PLIP interactions:11 interactions with chain N- Hydrogen bonds: N:S.14, N:G.15, N:L.16, N:D.157, N:D.157, N:K.213, N:G.302, N:T.303, N:K.336
- Salt bridges: N:K.18, N:K.18
ADP.20: 14 residues within 4Å:- Chain O: D.11, G.13, S.14, G.15, L.16, G.156, D.157, G.182, K.213, E.214, G.302, T.303, M.305
- Ligands: MG.19
12 PLIP interactions:12 interactions with chain O- Hydrogen bonds: O:D.11, O:G.13, O:S.14, O:G.15, O:L.16, O:D.157, O:D.157, O:D.157, O:K.213, O:K.213, O:G.302
- Salt bridges: O:K.18
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.4: 17 residues within 4Å:- Chain B: G.11, T.12, G.13, F.14, K.16, Q.137, G.156, D.157, V.159, K.213, E.214, G.302, S.303, M.305, Y.306, R.347
- Ligands: MG.3
12 PLIP interactions:11 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:T.12, B:G.13, B:F.14, B:D.157, B:D.157, B:D.157, B:V.159, B:K.213, B:G.302, C:D.55
- Salt bridges: B:K.16, B:K.16
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chou, S.Z. et al., Mechanism of actin filament branch formation by Arp2/3 complex revealed by a high-resolution cryo-EM structureof the branch junction. Proc.Natl.Acad.Sci.USA (2022)
- Release Date
- 2023-02-01
- Peptides
- Actin-related protein 3: A
Actin-related protein 2: B
Actin-related protein 2/3 complex subunit 1: C
Actin-related protein 2/3 complex subunit 2: D
Actin-related protein 2/3 complex subunit 3: E
Actin-related protein 2/3 complex subunit 4: F
Actin-related protein 2/3 complex subunit 5: G
Actin, alpha skeletal muscle: HIJKLMNO - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
MI
NJ
OK
PL
QM
RN
HO
I
SMTL ID : 8e9b.1
Cryo-EM structure of S. pombe Arp2/3 complex in the branch junction
Actin-related protein 3
Actin-related protein 2
Actin-related protein 2/3 complex subunit 1
Actin-related protein 2/3 complex subunit 2
Actin-related protein 2/3 complex subunit 3
Actin-related protein 2/3 complex subunit 4
Actin-related protein 2/3 complex subunit 5
Actin, alpha skeletal muscle
Toggle Identical (HIJKLMNO)Related Entries With Identical Sequence
1h1v.1 | 1j6z.1 | 1kxp.1 | 1lot.1 | 1m8q.1 | 1ma9.1 | 1mvw.1 | 1nwk.1 | 1o18.1 | 1o19.1 | 1o1a.1 | 1o1b.1 | 1o1c.1 | 1o1d.1 | 1o1e.1 | 1o1f.1 | 1o1g.1 | 1qz5.1 | 1qz6.1 | 1rdw.1 | 1rfq.1 | 1s22.1 | 1wua.1 | 1y64.1 | 1yxq.1 | 2a3z.1 | 2a40.1 | 2a40.2 | 2a40.3 | 2a41.1 more...less...2a42.1 | 2a5x.1 | 2asm.1 | 2aso.1 | 2asp.1 | 2d1k.1 | 2ff3.1 | 2ff6.1 | 2fxu.1 | 2hmp.1 | 2pav.1 | 2q0r.1 | 2q0u.1 | 2q1n.1 | 2q1n.2 | 2q31.1 | 2q31.2 | 2q36.1 | 2q97.1 | 2q97.2 | 2vcp.1 | 2vcp.2 | 2y83.1 | 2zwh.1 | 3buz.1 | 3dwl.1 | 3dwl.2 | 3hbt.1 | 3j4k.1 | 3j8a.1 | 3jbi.1 | 3jbj.1 | 3jbk.1 | 3m1f.1 | 3m3n.1 | 3mfp.1 | 3mfp.2 | 3mfp.3 | 3sjh.1 | 3tpq.1 | 3u8x.1 | 3u8x.2 | 3u9d.1 | 3u9d.2 | 3u9z.1 | 3ue5.1 | 3ue5.2 | 3ue5.3 | 4a7f.1 | 4a7h.1 | 4a7l.1 | 4a7n.1 | 4gy2.1 | 4h03.1 | 4h0t.1 | 4h0v.1 | 4h0x.1 | 4h0y.1 | 4k41.1 | 4k42.1 | 4k42.2 | 4k42.3 | 4k42.4 | 4k43.1 | 4k43.2 | 4pl8.1 | 4v0u.6 | 4v0u.7 | 4v0u.8 | 4v0u.9 | 4v0u.10 | 5h53.1 | 5jlf.1 | 5mva.1 | 5mvy.1 | 5onv.1 | 5ooc.1 | 5ood.1 | 5ooe.1 | 5oof.1 | 5yu8.1 | 6c1d.1 | 6c1g.1 | 6c1h.1 | 6d8c.1 | 6djm.1 | 6djn.1 | 6djo.1 | 6fhl.1 | 6fm2.1 | 6kll.1 | 6kln.1 | 6kn7.1 | 6kn8.1 | 6rsw.1 | 6t1y.1 | 6t20.1 | 6t23.1 | 6t24.1 | 6t25.1 | 6upv.1 | 6upw.1 | 6w17.1 | 6w18.1 | 6yp9.1 | 7c2f.1 | 7c2f.2 | 7k20.1 | 7k21.1 | 7ko4.1 | 7ko5.1 | 7ko7.1 | 7kon.1 | 7kor.1 | 7nxv.1 | 7nxv.2 | 7nzm.1 | 7t5q.1 | 8a2r.1 | 8a2s.1 | 8a2t.1 | 8a2u.1 | 8a2y.1 | 8a2z.1 | 8bjh.1 | 8bji.1 | 8bjj.1 | 8bo1.1 | 8bo1.2 | 8br0.1 | 8br0.2 | 8br1.1 | 8br1.2 | 8dmx.1 | 8of8.1 | 8ru0.1 | 8rv2.1 | 8syf.1 | 8uee.1 | 8uxw.1 | 8uxx.1 | 8viz.1 | 8vkh.1 | 9duu.1 | 9dva.1 | 9fjo.1