SMTL ID : 8ei8.1

Crystal structure of the WWP2 HECT domain in complex with H308, a Helicon Polypeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 3 residues within 4Å: Chain A: F.15, S.19 Ligands: PGE.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.19

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: D.3, R.4, K.9, D.252, E.255, R.304, E.373, E.374 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.4, A:K.9, A:R.304, A:E.373 EDO.3: 4 residues within 4Å: Chain A: L.113, R.117, A.234, D.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.113, A:R.117, A:D.237 EDO.4: 3 residues within 4Å: Chain A: Y.98, C.99, T.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.99

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 1 residues within 4Å: Ligands: PG4.1 No protein-ligand interaction detected (PLIP)

1 x WHL: N,N'-(1,4-phenylene)diacetamide(Covalent)

WHL.6: 6 residues within 4Å: Chain A: Q.264, E.265 Chain B: C.8, A.11, A.12, C.15 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Q.264, A:E.265, B:A.11 Hydrogen bonds: A:E.265, A:E.265, A:E.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokareva, O.S. et al., Recognition and reprogramming of E3 ubiquitin ligase surfaces by alpha-helical peptides. Nat Commun (2023)

Release Date

2023-10-25

Peptides

NEDD4-like E3 ubiquitin-protein ligase WWP2: A
H308: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NEDD4-like E3 ubiquitin-protein ligase WWP2

H308

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