SMTL ID : 8ekq.1

Apo rat TRPV2 in nanodiscs, state 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x PEX: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)

PEX.1: 12 residues within 4Å: Chain A: F.395, N.396, C.399, Y.400, L.443, Y.447, L.448, E.473, F.476, Y.514, Y.515, Y.675 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.443, A:Y.447, A:Y.447, A:L.448 Hydrogen bonds: A:N.396, A:E.473, A:Y.515 PEX.2: 12 residues within 4Å: Chain A: M.468, D.469, Y.471, F.472, L.475, L.510, R.517, Q.530, I.533, Q.663 Chain B: L.632, V.635 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.471, A:Y.471, A:F.472, A:L.475, A:L.510, A:L.510, A:I.533, B:L.632 Hydrogen bonds: A:Y.471, A:Y.471, A:Q.530, A:Q.663 Salt bridges: A:R.517 PEX.3: 12 residues within 4Å: Chain B: F.395, N.396, C.399, Y.400, L.443, Y.447, L.448, E.473, F.476, Y.514, Y.515, Y.675 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.443, B:Y.447, B:Y.447, B:L.448 Hydrogen bonds: B:N.396, B:E.473, B:Y.515 PEX.4: 12 residues within 4Å: Chain B: M.468, D.469, Y.471, F.472, L.475, L.510, R.517, Q.530, I.533, Q.663 Chain C: L.632, V.635 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:Y.471, B:Y.471, B:F.472, B:L.475, B:L.510, B:L.510, B:I.533, C:L.632 Hydrogen bonds: B:Y.471, B:Y.471, B:Q.530, B:Q.663 Salt bridges: B:R.517 PEX.5: 12 residues within 4Å: Chain C: F.395, N.396, C.399, Y.400, L.443, Y.447, L.448, E.473, F.476, Y.514, Y.515, Y.675 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:L.443, C:Y.447, C:Y.447, C:L.448 Hydrogen bonds: C:N.396, C:E.473, C:Y.515 PEX.6: 12 residues within 4Å: Chain C: M.468, D.469, Y.471, F.472, L.475, L.510, R.517, Q.530, I.533, Q.663 Chain D: L.632, V.635 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:Y.471, C:Y.471, C:F.472, C:L.475, C:L.510, C:L.510, C:I.533, D:L.632 Hydrogen bonds: C:Y.471, C:Y.471, C:Q.530, C:Q.663 Salt bridges: C:R.517 PEX.7: 12 residues within 4Å: Chain D: F.395, N.396, C.399, Y.400, L.443, Y.447, L.448, E.473, F.476, Y.514, Y.515, Y.675 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:L.443, D:Y.447, D:Y.447, D:L.448 Hydrogen bonds: D:N.396, D:E.473, D:Y.515 PEX.8: 12 residues within 4Å: Chain A: L.632, V.635 Chain D: M.468, D.469, Y.471, F.472, L.475, L.510, R.517, Q.530, I.533, Q.663 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:Y.471, D:Y.471, D:F.472, D:L.475, D:L.510, D:L.510, D:I.533, A:L.632 Hydrogen bonds: D:Y.471, D:Y.471, D:Q.530, D:Q.663 Salt bridges: D:R.517

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haug, F.M. et al., Functional and structural insights into activation of TRPV2 by weak acids. Embo J. (2024)

Release Date

2023-09-27

Peptides

Transient receptor potential cation channel subfamily V member 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 2

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