SMTL ID : 8f78.2 (1 other biounit)

Compound 1 bound to procaspase-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

1 x 2J6: 5-fluoro-2-({[3-(pyrimidin-2-yl)pyridin-2-yl]amino}methyl)phenol(Non-covalent)

2J6.1: 12 residues within 4Å: Chain A: A.195, S.196, V.197, Y.198, T.199, L.200, E.214 Chain B: Y.198, T.199, L.200, P.201 Ligands: CL.2 8 PLIP interactions: 1 interactions with chain B, 7 interactions with chain A pi-Stacking: B:Y.198, A:Y.198, A:Y.198 Hydrophobic interactions: A:Y.198, A:Y.198, A:L.200, A:E.214 Hydrogen bonds: A:T.199

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain B: N.125 Ligands: 2J6.1 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain B: E.135, Q.137 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: Y.216 Chain B: K.144, G.145, D.146 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Togo, T. et al., Systematic Study of Heteroarene Stacking Using a Congeneric Set of Molecular Glues for Procaspase-6. J.Med.Chem. (2023)

Release Date

2023-12-13

Peptides

Procaspase-6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Procaspase-6

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