SMTL ID : 8fbv.2 (1 other biounit)

Compound 7 bound to procaspase-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

homo-dimer

Ligands

1 x XOW: 5-fluoro-2-({[(3M)-3-(1H-imidazol-2-yl)pyridin-2-yl]amino}methyl)phenol(Non-covalent)

XOW.1: 11 residues within 4Å: Chain A: Y.198, T.199, L.200, P.201 Chain B: A.195, S.196, V.197, Y.198, T.199, L.200, E.214 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.198, B:Y.198, B:L.200, B:E.214, A:Y.198, A:Y.198 Hydrogen bonds: B:T.199 pi-Stacking: B:Y.198, A:Y.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Togo, T. et al., Systematic Study of Heteroarene Stacking Using a Congeneric Set of Molecular Glues for Procaspase-6. J.Med.Chem. (2023)

Release Date

2023-12-13

Peptides

Procaspase-6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Procaspase-6

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