SMTL ID : 8f96.1 (1 other biounit)

Compound 3 bound to procaspase-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

1 x XLW: 5-fluoro-2-({[(3M)-3-(pyrimidin-4-yl)pyridin-2-yl]amino}methyl)phenol(Non-covalent)

XLW.1: 11 residues within 4Å: Chain A: Y.198, T.199, L.200, P.201 Chain B: A.195, S.196, V.197, Y.198, T.199, L.200, E.214 10 PLIP interactions: 3 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:Y.198, B:Y.198, B:Y.198, B:L.200, B:E.214 Water bridges: A:Q.137, B:Y.198 pi-Stacking: A:Y.198, B:Y.198 Hydrogen bonds: B:T.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Togo, T. et al., Systematic Study of Heteroarene Stacking Using a Congeneric Set of Molecular Glues for Procaspase-6. J.Med.Chem. (2023)

Release Date

2023-12-13

Peptides

Procaspase-6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Procaspase-6

Related Entries With Identical Sequence