SMTL ID : 8fdx.1

AGF271 and GAR in complex with human recombinant GARFTase, ligase, purine biosynthesis, transfers formyl group from 10-formyl tetrahydrofolate to glycinamide ribonucleotide (GAR) to form tetrahydrofolate and formyl GAR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 13 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, G.88, M.90, I.108, H.109, P.110, G.118, K.171, E.174 Ligands: XRR.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.11, A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:E.174, A:E.174 Water bridges: A:T.11, A:T.11, A:L.15, A:A.87, A:G.88, A:I.108, A:H.109, A:D.145 Salt bridges: A:K.171

1 x XRR: N-{4-[3-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)propyl]thiophene-2-carbonyl}-L-glutamic acid(Non-covalent)

XRR.2: 20 residues within 4Å: Chain A: K.38, R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, G.118, S.119, H.138, V.140, A.141, E.142, D.143, V.144, D.145 Ligands: GAR.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.86, A:I.92, A:V.140 Hydrogen bonds: A:M.90, A:I.92, A:L.93, A:L.93, A:D.143, A:D.145 Water bridges: A:A.141, A:A.141 Salt bridges: A:K.38, A:R.65, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, N. et al., Multitargeted 6-Substituted Thieno[2,3- d ]pyrimidines as Folate Receptor-Selective Anticancer Agents that Inhibit Cytosolic and Mitochondrial One-Carbon Metabolism. Acs Pharmacol Transl Sci (2023)

Release Date

2023-05-10

Peptides

Trifunctional purine biosynthetic protein adenosine-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trifunctional purine biosynthetic protein adenosine-3

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