SMTL ID : 8fdy.1

Human GAR transformylase in complex with GAR substrate and AGF132 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

1 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 15 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, A.87, G.88, M.90, N.107, I.108, H.109, P.110, D.145, K.171, E.174 Ligands: XSI.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.11, A:T.11, A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:N.107, A:I.108, A:I.108, A:H.109, A:E.174 Water bridges: A:L.15, A:H.122, A:K.171 Salt bridges: A:K.171

1 x XSI: N-{5-[4-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]pyridine-2-carbonyl}-L-glutamic acid(Non-covalent)

XSI.2: 17 residues within 4Å: Chain A: F.89, M.90, R.91, I.92, L.93, V.98, N.107, K.117, G.118, S.119, Q.124, V.140, A.141, E.142, V.144, D.145 Ligands: GAR.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.140, A:V.144 Hydrogen bonds: A:L.93, A:L.93, A:S.119, A:S.119, A:S.119, A:A.141, A:D.145 Water bridges: A:A.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, N. et al., Multitargeted 6-Substituted Thieno[2,3- d ]pyrimidines as Folate Receptor-Selective Anticancer Agents that Inhibit Cytosolic and Mitochondrial One-Carbon Metabolism. Acs Pharmacol Transl Sci (2023)

Release Date

2023-05-10

Peptides

Phosphoribosylglycinamide formyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoribosylglycinamide formyltransferase

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