SMTL ID : 8fdz.1

Human GAR transformylase in complex with GAR substrate and AGF302 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

monomer

Ligands

1 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 16 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, A.87, G.88, F.89, M.90, I.108, H.109, P.110, G.118, S.119, K.171, E.174 Ligands: XSO.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:T.11, A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:I.108, A:G.118, A:E.174 Water bridges: A:G.10, A:T.11, A:L.15, A:A.87, A:G.88, A:I.108, A:H.109, A:K.171 Salt bridges: A:K.171

1 x XSO: N-{5-[4-(2-amino-4-oxo-1,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]-3-fluoropyridine-2-carbonyl}-L-glutamic acid(Non-covalent)

XSO.2: 20 residues within 4Å: Chain A: K.38, R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, G.118, S.119, H.138, V.140, A.141, E.142, D.143, V.144, D.145 Ligands: GAR.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.140, A:V.144 Hydrogen bonds: A:M.90, A:I.92, A:L.93, A:L.93, A:L.93, A:D.145 Water bridges: A:S.119, A:A.141, A:A.141 Salt bridges: A:K.38, A:R.65, A:R.91, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, N. et al., Multitargeted 6-Substituted Thieno[2,3- d ]pyrimidines as Folate Receptor-Selective Anticancer Agents that Inhibit Cytosolic and Mitochondrial One-Carbon Metabolism. Acs Pharmacol Transl Sci (2023)

Release Date

2023-05-10

Peptides

Phosphoribosylglycinamide formyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoribosylglycinamide formyltransferase

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