SMTL ID : 8fjw.1

Human GAR transformylase in complex with GAR substrate and AGF347 inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x GAR: GLYCINAMIDE RIBONUCLEOTIDE(Non-covalent)

GAR.1: 15 residues within 4Å: Chain A: T.11, G.12, S.13, N.14, A.87, G.88, M.90, N.107, I.108, H.109, P.110, G.118, K.171, E.174 Ligands: Y79.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:T.11, A:G.12, A:S.13, A:S.13, A:N.14, A:N.14, A:N.107, A:I.108, A:I.108, A:H.109, A:E.174 Water bridges: A:T.11, A:T.11, A:S.13, A:L.15, A:A.87, A:G.88, A:I.108 Salt bridges: A:K.171

1 x Y79: N-{4-[4-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-L-glutamic acid(Non-covalent)

Y79.2: 16 residues within 4Å: Chain A: R.65, L.86, F.89, M.90, R.91, I.92, L.93, V.98, N.107, G.118, S.119, V.140, A.141, E.142, V.144 Ligands: GAR.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.92, A:L.93 Hydrogen bonds: A:M.90, A:M.90, A:I.92, A:L.93, A:L.93, A:A.141 Water bridges: A:A.141 Salt bridges: A:R.65, A:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nayeen, M.J. et al., Structure-Based Design of Transport-Specific Multitargeted One-Carbon Metabolism Inhibitors in Cytosol and Mitochondria. J.Med.Chem. (2023)

Release Date

2023-09-06

Peptides

Trifunctional purine biosynthetic protein adenosine-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trifunctional purine biosynthetic protein adenosine-3

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