SMTL ID : 8fjz.3 (2 other biounits)

Crystal structure of HPK1 kinase domain T165E,S171E phosphomimetic mutant in complex with 3-{4-[(3R,5S)-3-Amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x Y3I: (3P)-3-{4-[(3R,5S)-3-amino-5-methylpiperidin-1-yl]-6-chloro-7H-pyrrolo[2,3-d]pyrimidin-5-yl}benzonitrile(Non-covalent)

Y3I.1: 17 residues within 4Å: Chain A: L.47, G.48, G.49, V.55, A.68, K.70, V.99, M.115, E.116, F.117, C.118, G.121, D.125, A.165, N.166, L.168, D.179 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.168, A:L.168, A:D.179 Hydrogen bonds: A:E.116, A:C.118, A:D.125 Water bridges: A:T.51, A:S.122, A:D.179 Y3I.2: 17 residues within 4Å: Chain B: L.47, G.48, G.49, V.55, A.68, K.70, V.99, M.115, E.116, F.117, C.118, G.121, D.125, A.165, N.166, L.168, D.179 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.55, B:L.168, B:L.168, B:D.179 Hydrogen bonds: B:E.116, B:C.118, B:D.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gallego, R.A. et al., Design and Synthesis of Functionally Active 5-Amino-6-Aryl Pyrrolopyrimidine Inhibitors of Hematopoietic Progenitor Kinase 1. J.Med.Chem. (2023)

Release Date

2023-04-05

Peptides

Mitogen-activated protein kinase kinase kinase kinase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

Mitogen-activated protein kinase kinase kinase kinase 1

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