- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 229 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x OCW: Tetracenomycin X(Non-functional Binders)
- 5 x ZN: ZINC ION(Non-covalent)
ZN.230: 5 residues within 4Å:- Chain 8: C.45, V.47, C.82, K.84, C.85
No protein-ligand interaction detected (PLIP)ZN.232: 5 residues within 4Å:- Chain b: C.18, R.20, C.21, C.33, C.36
5 PLIP interactions:5 interactions with chain b- Metal complexes: b:C.18, b:R.20, b:C.21, b:C.33, b:C.36
ZN.233: 4 residues within 4Å:- Chain e: C.20, C.23, C.34, C.39
4 PLIP interactions:4 interactions with chain e- Metal complexes: e:C.20, e:C.23, e:C.34, e:C.39
ZN.234: 4 residues within 4Å:- Chain g: C.11, C.14, C.71, C.76
3 PLIP interactions:3 interactions with chain g- Metal complexes: g:C.11, g:C.71, g:C.76
ZN.235: 4 residues within 4Å:- Chain h: C.38, C.41, C.56, C.59
4 PLIP interactions:4 interactions with chain h- Metal complexes: h:C.38, h:C.41, h:C.56, h:C.59
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Osterman, I.A. et al., Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel. Nat.Chem.Biol. (2020)
- Release Date
- 2020-07-08
- Peptides
- 60S ribosomal protein L8: D
60S ribosomal protein L3: E
60S ribosomal protein L4: F
60S ribosomal protein L5: G
60S ribosomal protein L6: H
60S ribosomal protein L7: I
60S ribosomal protein L7a: J
60S ribosomal protein L9: K
60S ribosomal protein L10-like: L
60S ribosomal protein L11: M
60S ribosomal protein L13: N
60S ribosomal protein L14: O
60S ribosomal protein L15: P
60S ribosomal protein L13a: Q
60S ribosomal protein L17: R
60S ribosomal protein L18: S
60S ribosomal protein L19: T
60S ribosomal protein L18a: U
60S ribosomal protein L21: V
60S ribosomal protein L22: W
60S ribosomal protein L23: X
60S ribosomal protein L24: Y
60S ribosomal protein L23a: Z
60S ribosomal protein L26: 0
60S ribosomal protein L27: 1
60S ribosomal protein L27a: 2
60S ribosomal protein L29: 3
60S ribosomal protein L30: 4
60S ribosomal protein L31: 5
60S ribosomal protein L32: 6
60S ribosomal protein L35a: 7
60S ribosomal protein L34: 8
60S ribosomal protein L35: 9
60S ribosomal protein L36: a
60S ribosomal protein L37: b
60S ribosomal protein L38: c
60S ribosomal protein L39: d
Ubiquitin-60S ribosomal protein L40: e
60S ribosomal protein L41: f
60S ribosomal protein L36a: g
60S ribosomal protein L37a: h
60S ribosomal protein L28: i
60S ribosomal protein L10a: j - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:D
LAE
LBF
LCG
LDH
LEI
LFJ
LGK
LHL
LIM
LJN
LLO
LMP
LNQ
LOR
LPS
LQT
LRU
LSV
LTW
LUX
LVY
LWZ
LX0
LY1
LZ2
La3
Lb4
Lc5
Ld6
Le7
Lf8
Lg9
Lha
Lib
Ljc
Lkd
Lle
Lmf
Lng
Loh
Lpi
Lrj
Lz
SMTL ID : 6y6x.1
Tetracenomycin X bound to the human ribosome
60S ribosomal protein L8
60S ribosomal protein L3
60S ribosomal protein L4
60S ribosomal protein L5
60S ribosomal protein L6
60S ribosomal protein L7
60S ribosomal protein L7a
60S ribosomal protein L9
60S ribosomal protein L10-like
60S ribosomal protein L11
60S ribosomal protein L13
60S ribosomal protein L14
60S ribosomal protein L15
60S ribosomal protein L13a
60S ribosomal protein L17
60S ribosomal protein L18
60S ribosomal protein L19
60S ribosomal protein L18a
60S ribosomal protein L21
60S ribosomal protein L22
60S ribosomal protein L23
60S ribosomal protein L24
60S ribosomal protein L23a
60S ribosomal protein L26
60S ribosomal protein L27
60S ribosomal protein L27a
60S ribosomal protein L29
60S ribosomal protein L30
60S ribosomal protein L31
60S ribosomal protein L32
60S ribosomal protein L35a
60S ribosomal protein L34
60S ribosomal protein L35
60S ribosomal protein L36
60S ribosomal protein L37
60S ribosomal protein L38
60S ribosomal protein L39
Ubiquitin-60S ribosomal protein L40
60S ribosomal protein L41
60S ribosomal protein L36a
60S ribosomal protein L37a
60S ribosomal protein L28
60S ribosomal protein L10a
Related Entries With Identical Sequence
3j7o.1 | 3j7p.6 | 3j7p.16 | 3j7p.42 | 3j7q.1 | 3j7r.6 | 3j7r.15 | 3j7r.41 | 3j7r.43 | 3jag.13 | 3jag.19 | 3jag.21 | 3jag.24 | 3jag.25 | 3jag.29 | 3jag.30 | 3jag.32 | 3jag.35 | 3jag.36 | 3jag.37 | 3jag.38 | 3jag.41 | 3jah.13 | 3jah.15 | 3jah.19 | 3jah.21 | 3jah.24 | 3jah.25 | 3jah.29 | 3jah.30 more...less...3jah.32 | 3jah.35 | 3jah.36 | 3jah.37 | 3jah.38 | 3jah.41 | 3jai.13 | 3jai.15 | 3jai.19 | 3jai.21 | 3jai.24 | 3jai.25 | 3jai.29 | 3jai.30 | 3jai.32 | 3jai.35 | 3jai.36 | 3jai.37 | 3jai.38 | 3jai.41 | 3jaj.4 | 3jaj.8 | 3jaj.13 | 3jaj.15 | 3jaj.17 | 3jaj.18 | 3jaj.22 | 3jaj.23 | 3jaj.24 | 3jaj.25 | 3jaj.27 | 3jaj.28 | 3jaj.29 | 3jaj.30 | 3jaj.35 | 3jaj.37 | 3jaj.41 | 3jan.4 | 3jan.8 | 3jan.13 | 3jan.15 | 3jan.17 | 3jan.18 | 3jan.22 | 3jan.23 | 3jan.24 | 3jan.25 | 3jan.27 | 3jan.28 | 3jan.29 | 3jan.30 | 3jan.35 | 3jan.37 | 3jan.41 | 4ug0.43 | 4v6x.36 | 4v6x.73 | 5aj0.45 | 5lks.43 | 5t2c.38 | 6d90.38 | 6d90.45 | 6d9j.36 | 6d9j.38 | 6d9j.45 | 6frk.1 | 6ftg.1 | 6fti.1 | 6ftj.1 | 6gz3.45 | 6gz3.46 | 6gz3.48 | 6gz3.49 | 6gz3.59 | 6gz3.64 | 6gz3.65 | 6gz3.66 | 6gz3.69 | 6gz3.70 | 6gz3.73 | 6gz3.74 | 6gz3.76 | 6gz4.45 | 6gz4.46 | 6gz4.48 | 6gz4.49 | 6gz4.59 | 6gz4.64 | 6gz4.65 | 6gz4.66 | 6gz4.69 | 6gz4.70 | 6gz4.73 | 6gz4.74 | 6gz4.76 | 6gz5.45 | 6gz5.46 | 6gz5.48 | 6gz5.49 | 6gz5.59 | 6gz5.64 | 6gz5.65 | 6gz5.66 | 6gz5.69 | 6gz5.70 | 6gz5.73 | 6gz5.74 | 6gz5.76 | 6hcf.81 | 6hcj.77 | 6hcm.81 | 6hcq.77 | 6ip5.43 | 6lqm.1 | 6lsr.1 | 6lu8.1 | 6mtb.1 | 6mtb.13 | 6mtb.19 | 6mtb.21 | 6mtb.24 | 6mtb.25 | 6mtb.29 | 6mtb.30 | 6mtb.32 | 6mtb.35 | 6mtb.36 | 6mtb.38 | 6mtb.41 | 6mtc.1 | 6mtc.13 | 6mtc.19 | 6mtc.21 | 6mtc.24 | 6mtc.25 | 6mtc.29 | 6mtc.30 | 6mtc.32 | 6mtc.35 | 6mtc.36 | 6mtc.38 | 6mtc.41 | 6mtd.1 | 6mtd.13 | 6mtd.19 | 6mtd.21 | 6mtd.24 | 6mtd.25 | 6mtd.29 | 6mtd.30 | 6mtd.32 | 6mtd.35 | 6mtd.36 | 6mtd.38 | 6mtd.41 | 6mte.1 | 6mte.13 | 6mte.19 | 6mte.21 | 6mte.24 | 6mte.25 | 6mte.29 | 6mte.30 | 6mte.32 | 6mte.35 | 6mte.36 | 6mte.38 | 6mte.41 | 6ole.35 | 6ole.38 | 6ole.39 | 6ole.45 | 6ole.46 | 6ole.48 | 6ole.49 | 6ole.57 | 6ole.59 | 6ole.60 | 6ole.64 | 6ole.65 | 6ole.66 | 6ole.69 | 6ole.70 | 6ole.73 | 6ole.74 | 6olf.35 | 6olf.38 | 6olf.39 | 6olf.45 | 6olf.46 | 6olf.48 | 6olf.49 | 6olf.57 | 6olf.58 | 6olf.59 | 6olf.63 | 6olf.64 | 6olf.65 | 6olf.68 | 6olf.69 | 6olf.72 | 6olf.73 | 6olg.16 | 6olg.17 | 6olg.19 | 6olg.20 | 6olg.30 | 6olg.31 | 6olg.35 | 6olg.36 | 6olg.37 | 6olg.40 | 6olg.41 | 6olg.44 | 6olg.45 | 6olg.48 | 6oli.35 | 6oli.38 | 6oli.39 | 6oli.45 | 6oli.46 | 6oli.48 | 6oli.49 | 6oli.57 | 6oli.59 | 6oli.60 | 6oli.64 | 6oli.65 | 6oli.66 | 6oli.69 | 6oli.70 | 6oli.73 | 6oli.74 | 6olz.1 | 6olz.8 | 6olz.15 | 6olz.16 | 6olz.18 | 6olz.19 | 6olz.29 | 6olz.34 | 6olz.35 | 6olz.36 | 6olz.39 | 6olz.40 | 6olz.43 | 6olz.44 | 6om0.35 | 6om0.38 | 6om0.39 | 6om0.45 | 6om0.46 | 6om0.48 | 6om0.49 | 6om0.57 | 6om0.59 | 6om0.60 | 6om0.64 | 6om0.65 | 6om0.66 | 6om0.69 | 6om0.70 | 6om0.73 | 6om0.74 | 6om7.35 | 6om7.38 | 6om7.39 | 6om7.45 | 6om7.46 | 6om7.48 | 6om7.49 | 6om7.57 | 6om7.59 | 6om7.60 | 6om7.64 | 6om7.65 | 6om7.66 | 6om7.69 | 6om7.70 | 6om7.73 | 6om7.74 | 6p5i.71 | 6p5i.76 | 6p5j.71 | 6p5j.76 | 6p5k.38 | 6p5k.43 | 6p5n.38 | 6p5n.43 | 6qzp.1 | 6qzp.3 | 6qzp.4 | 6qzp.6 | 6qzp.7 | 6qzp.8 | 6qzp.9 | 6qzp.10 | 6qzp.11 | 6qzp.12 | 6qzp.13 | 6qzp.14 | 6qzp.15 | 6qzp.16 | 6qzp.17 | 6qzp.18 | 6qzp.19 | 6qzp.21 | 6qzp.22 | 6qzp.23 | 6qzp.24 | 6qzp.25 | 6qzp.26 | 6qzp.28 | 6qzp.29 | 6qzp.30 | 6qzp.31 | 6qzp.32 | 6qzp.33 | 6qzp.34 | 6qzp.35 | 6qzp.36 | 6qzp.37 | 6qzp.38 | 6qzp.39 | 6qzp.40 | 6qzp.41 | 6qzp.42 | 6qzp.43 | 6r5q.2 | 6r5q.14 | 6r5q.20 | 6r5q.22 | 6r5q.25 | 6r5q.26 | 6r5q.30 | 6r5q.31 | 6r5q.33 | 6r5q.36 | 6r5q.37 | 6r5q.39 | 6r5q.42 | 6r6g.5 | 6r6g.30 | 6r6g.42 | 6r6g.47 | 6r6g.51 | 6r6g.52 | 6r6g.56 | 6r6g.57 | 6r6g.59 | 6r6g.62 | 6r6g.63 | 6r6g.65 | 6r6g.68 | 6r6p.13 | 6r6p.19 | 6r6p.21 | 6r6p.24 | 6r6p.25 | 6r6p.29 | 6r6p.30 | 6r6p.32 | 6r6p.35 | 6r6p.36 | 6r6p.37 | 6r6p.38 | 6r6p.41 | 6r7q.23 | 6r7q.35 | 6r7q.41 | 6r7q.43 | 6r7q.46 | 6r7q.47 | 6r7q.52 | 6r7q.53 | 6r7q.55 | 6r7q.58 | 6r7q.59 | 6r7q.61 | 6r7q.64 | 6sgc.78 | 6swa.1 | 6xa1.1 | 6xa1.5 | 6xa1.6 | 6xa1.7 | 6xa1.8 | 6xa1.9 | 6xa1.10 | 6xa1.12 | 6xa1.13 | 6xa1.14 | 6xa1.15 | 6xa1.16 | 6xa1.17 | 6xa1.18 | 6xa1.19 | 6xa1.21 | 6xa1.22 | 6xa1.23 | 6xa1.24 | 6xa1.25 | 6xa1.26 | 6xa1.28 | 6xa1.29 | 6xa1.30 | 6xa1.31 | 6xa1.32 | 6xa1.33 | 6xa1.34 | 6xa1.35 | 6xa1.36 | 6xa1.37 | 6xa1.38 | 6xa1.39 | 6xa1.40 | 6xa1.41 | 6xa1.42 | 6z6l.43 | 6z6m.43 | 6z6n.43 | 6zm7.45 | 6zme.45 | 6zmi.45 | 6zmo.45 | 6zvj.1 | 6zvk.5 | 6zvk.8 | 6zvk.9 | 6zvk.11 | 6zvk.14 | 6zvk.19 | 6zvk.20 | 6zvk.22 | 6zvk.26 | 6zvk.27 | 6zvk.28 | 6zvk.31 | 6zvk.39 | 6zvk.44 | 6zvk.45 | 6zvk.46 | 7a01.2 | 7a01.5 | 7a01.9 | 7a01.10 | 7a01.13 | 7a01.17 | 7a01.18 | 7a01.19 | 7a01.23 | 7a01.29 | 7a01.32 | 7a01.37 | 7a01.38 | 7a01.40 | 7a01.42 | 7a01.43 | 7nfx.1 | 7nwg.46 | 7nwg.52 | 7nwg.54 | 7nwg.57 | 7nwg.61 | 7nwg.62 | 7nwg.68 | 7nwg.77 | 7nwh.32 | 7nwh.69 | 7nwi.13 | 7nwi.15 | 7nwi.19 | 7nwi.21 | 7nwi.24 | 7nwi.25 | 7nwi.29 | 7nwi.30 | 7nwi.36 | 7nwi.37 | 7nwi.41 | 7obr.1 | 7ow7.1 | 7qgg.76 | 7qwq.1 | 7qwr.1 | 7qws.1 | 7toq.14 | 7toq.20 | 7toq.22 | 7toq.25 | 7toq.26 | 7toq.30 | 7toq.31 | 7toq.33 | 7toq.36 | 7toq.37 | 7toq.38 | 7toq.39 | 7toq.42 | 7tor.1 | 7tor.14 | 7tor.20 | 7tor.22 | 7tor.25 | 7tor.26 | 7tor.30 | 7tor.31 | 7tor.33 | 7tor.36 | 7tor.37 | 7tor.39 | 7tor.42 | 7ucj.1 | 7ucj.13 | 7ucj.19 | 7ucj.24 | 7ucj.25 | 7ucj.29 | 7ucj.30 | 7ucj.32 | 7ucj.35 | 7ucj.36 | 7ucj.41 | 7uck.1 | 7uck.13 | 7uck.19 | 7uck.21 | 7uck.24 | 7uck.25 | 7uck.29 | 7uck.30 | 7uck.32 | 7uck.35 | 7uck.36 | 7uck.41 | 7xny.25 | 8b5l.1 | 8b6c.1 | 8bf9.1 | 8bhf.1 | 8bhf.7 | 8bhf.12 | 8bhf.13 | 8bhf.17 | 8bhf.18 | 8bhf.20 | 8bhf.23 | 8bhf.24 | 8bhf.26 | 8bhf.29 | 8bhf.68 | 8fkt.1 | 8fku.1 | 8fkv.1 | 8fkw.1 | 8fkx.1 | 8fky.1 | 8fl2.2 | 8fl3.2 | 8fl4.1 | 8g5y.34 | 8g5z.37 | 8g5z.39 | 8g5z.44 | 8g5z.49 | 8g5z.52 | 8g5z.53 | 8g5z.55 | 8g5z.56 | 8g5z.59 | 8g5z.61 | 8g5z.62 | 8g5z.63 | 8g5z.65 | 8g5z.66 | 8g5z.67 | 8g5z.68 | 8g5z.69 | 8g5z.70 | 8g5z.71 | 8g5z.72 | 8g5z.73 | 8g5z.74 | 8g5z.75 | 8g5z.77 | 8g5z.78 | 8g60.34 | 8g61.34 | 8g6j.34 | 8idy.1 | 8ifd.43 | 8ife.43 | 8inf.1 | 8k2c.45 | 8ohd.1 | 8oj0.1 | 8oj5.1 | 8oj8.1 | 8qfc.1 | 8qoi.3 | 8qoi.4 | 8qoi.5 | 8xsx.45 | 8xsy.45 | 8y0w.45 | 8yop.45 | 9bdl.1 | 9bdl.13 | 9bdl.19 | 9bdl.21 | 9bdl.24 | 9bdl.25 | 9bdl.29 | 9bdl.30 | 9bdl.32 | 9bdl.35 | 9bdl.36 | 9bdl.38 | 9bdl.41 | 9bdn.1 | 9bdn.14 | 9bdn.20 | 9bdn.22 | 9bdn.25 | 9bdn.26 | 9bdn.30 | 9bdn.31 | 9bdn.33 | 9bdn.36 | 9bdn.37 | 9bdn.39 | 9bdn.42 | 9bdp.1 | 9bdp.14 | 9bdp.20 | 9bdp.22 | 9bdp.25 | 9bdp.26 | 9bdp.30 | 9bdp.31 | 9bdp.33 | 9bdp.36 | 9bdp.37 | 9bdp.39 | 9bdp.42 | 9fpz.1