SMTL ID : 8fv2.2 (3 other biounits)

Bromodomain of CBP liganded with CCS-1477

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: E.7, R.10 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.11 Salt bridges: A:R.10 PO4.2: 2 residues within 4Å: Chain A: R.88, S.91 6 PLIP interactions: 6 interactions with chain A Water bridges: A:S.91, A:S.91, A:R.92, A:R.92, A:R.92 Salt bridges: A:R.88

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: W.77, W.84, A.101 No protein-ligand interaction detected (PLIP)

2 x JHL: (6S)-1-[3,4-bis(fluoranyl)phenyl]-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(4-methoxycyclohexyl)benzimidazol-2-yl]piperidin-2-one(Non-covalent)

JHL.4: 12 residues within 4Å: Chain A: P.25, L.28, P.29, F.30, V.34, I.41, Y.44, Y.86, N.87, R.92, V.93, F.96 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.29, A:F.30, A:I.41, A:Y.86, A:V.93, A:V.93 Hydrogen bonds: A:N.87, A:R.92 Water bridges: A:Y.44 pi-Cation interactions: A:R.92 Halogen bonds: A:P.25 JHL.5: 12 residues within 4Å: Chain A: K.2, F.4, E.8, L.9, Q.11, A.12, L.13, P.69, P.110, V.111, S.114, L.115 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.8, A:Q.11, A:P.69, A:P.110, A:V.111, A:L.115 Hydrogen bonds: A:S.114 pi-Stacking: A:F.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shendy, N.A.M. et al., Group 3 medulloblastoma transcriptional networks collapse under domain specific EP300/CBP inhibition. Nat Commun (2024)

Release Date

2024-02-07

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CREB-binding protein

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