SMTL ID : 8fxa.1 (1 other biounit)

Bromodomain of CBP liganded with iCBP4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: E.26 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.26 EDO.2: 5 residues within 4Å: Chain A: K.60, Q.65, Y.66, Q.71, D.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.60 Water bridges: A:Q.71, A:D.75 EDO.3: 3 residues within 4Å: Chain A: E.18, Y.21, K.58 No protein-ligand interaction detected (PLIP)

1 x YJY: (6S)-1-[3,5-bis(trifluoromethyl)phenyl]-6-{(5M)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one(Non-covalent)

YJY.4: 13 residues within 4Å: Chain A: L.28, P.29, F.30, Q.32, V.34, L.38, L.39, I.41, Y.44, N.87, R.92, V.93, F.96 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.29, A:F.30, A:L.38, A:L.39, A:L.39, A:I.41, A:V.93 Hydrogen bonds: A:N.87, A:R.92, A:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shendy, N.A.M. et al., Group 3 medulloblastoma transcriptional networks collapse under domain specific EP300/CBP inhibition. Nat Commun (2024)

Release Date

2024-02-07

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

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