SMTL ID : 8g6t.4 (3 other biounits)

Bromodomain of CBP liganded with inhibitor iCBP2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x YRI: (6S)-1-(3,4-dibromophenyl)-6-{(5M)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one(Non-covalent)

YRI.1: 13 residues within 4Å: Chain A: P.25, L.28, P.29, F.30, V.34, L.39, I.41, Y.44, Y.86, N.87, R.92, V.93, F.96 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.29, A:F.30, A:L.39, A:L.39, A:I.41, A:Y.86, A:V.93, A:V.93 Hydrogen bonds: A:N.87, A:R.92, A:R.92 Halogen bonds: A:P.25

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 1 residues within 4Å: Chain A: D.46 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.46, A:D.46, H2O.3, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shendy, N.A.M. et al., Group 3 medulloblastoma transcriptional networks collapse under domain specific EP300/CBP inhibition. Nat Commun (2024)

Release Date

2024-02-21

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

CREB-binding protein

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