SMTL ID : 8fvj.1

Dimeric form of HIV-1 Vif in complex with human CBF-beta, ELOB, ELOC, and CUL5

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain B: H.110, D.115, C.116, C.135, Y.137, H.141 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.110, B:C.116, B:C.135, B:H.141 ZN.2: 5 residues within 4Å: Chain G: H.110, C.116, C.135, Y.137, H.141 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.110, G:C.116, G:C.135, G:H.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ito, F. et al., Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H. Nat Commun (2023)

Release Date

2023-09-06

Peptides

Core-binding factor subunit beta: AF
Virion infectivity factor: BG
Elongin-B: CH
Elongin-C: DI
Cullin-5: EJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

F
5

B
1

G
6

C
3

H
8

D
4

I
9

E
2

J
7

Core-binding factor subunit beta

Virion infectivity factor

Elongin-B

Elongin-C

Cullin-5

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