SMTL ID : 8wdk.1

The complex structure of Cul2-VCB-Protac-Wee1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x W6U: (2S,4R)-1-[(2S)-3,3-dimethyl-2-[3-[4-[4-[4-[[3-oxidanylidene-1-[6-(2-oxidanylpropan-2-yl)pyridin-2-yl]-2-prop-2-enyl-pyrazolo[3,4-d]pyrimidin-6-yl]amino]phenyl]piperazin-1-yl]butoxy]propanoylamino]butanoyl]-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide

W6U.1: 25 residues within 4Å: Chain C: R.11, W.30, F.33, Y.40, P.41, L.43, R.49, I.51, H.52, S.53, Y.54, H.57, W.59 Chain F: I.16, F.21, V.24, K.39, N.87, E.88, Y.89, C.90, N.91, G.93, S.141, F.144 22 PLIP interactions: 11 interactions with chain F, 11 interactions with chain C Hydrophobic interactions: F:I.16, F:I.16, F:F.21, F:V.24, F:V.24, F:K.39, F:K.39, C:I.51, C:Y.54, C:W.59 Hydrogen bonds: F:N.87, F:C.90, F:C.90, F:S.141, C:R.11, C:R.11, C:Y.40, C:R.49, C:H.52, C:S.53, C:Y.54 pi-Stacking: C:Y.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, P. et al., Structure of Cul2-VCB-Protac-Wee1 complex at 3.6 Angstrom resolution. To Be Published

Release Date

2024-09-18

Peptides

Cullin-2: A
E3 ubiquitin-protein ligase RBX1, N-terminally processed: B
von Hippel-Lindau disease tumor suppressor: C
Elongin-B: D
Elongin-C: E
Wee1-like protein kinase: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
R

C
V

D
B

E
C

F
W

Cullin-2

E3 ubiquitin-protein ligase RBX1, N-terminally processed

von Hippel-Lindau disease tumor suppressor

Elongin-B

Elongin-C

Wee1-like protein kinase

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