SMTL ID : 8ei3.1 (1 other biounit)

Crystal structure of VHL in complex with H313, a Helicon Polypeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.49 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x WHL: N,N'-(1,4-phenylene)diacetamide(Covalent)

WHL.1: 8 residues within 4Å: Chain C: R.14, V.16, G.64, V.87 Chain D: C.8, A.11, A.12, C.15 9 PLIP interactions: 3 interactions with chain D, 6 interactions with chain C Hydrophobic interactions: D:A.11, D:A.12, C:V.16, C:V.16, C:V.87 Hydrogen bonds: D:A.11, C:R.14, C:R.14, C:R.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokareva, O.S. et al., Recognition and reprogramming of E3 ubiquitin ligase surfaces by alpha-helical peptides. Nat Commun (2023)

Release Date

2023-10-25

Peptides

Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C
H313: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

H313

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