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SMTL ID : 8fyp.1

MicroED structure of Proteinase K from xenon milled lamellae

Coordinates

PDB Format Compare

Method

ELECTRON CRYSTALLOGRAPHY 1.45 Å

Oligo State

monomer

Ligands

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.1:	5 residues within 4Å: Chain A: Y.60, Y.61, K.94, D.97, D.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.94, A:D.98 Water bridges: A:Y.61, A:Y.61, A:G.66, A:D.98
NO3.2:	5 residues within 4Å: Chain A: M.55, V.56, K.57, T.58, S.63 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.55, A:S.63 Water bridges: A:T.58, A:T.58

2 x CA: CALCIUM ION(Non-covalent)

CA.3:	5 residues within 4Å: Chain A: P.175, V.177, C.178, T.179, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:P.175, A:D.200, A:D.200, H₂O.5, H₂O.6
CA.4:	4 residues within 4Å: Chain A: R.12, T.16, S.17, D.260 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.16, H₂O.6, H₂O.7, H₂O.8, H₂O.9

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Martynowycz, M.W. et al., A robust approach for MicroED sample preparation of lipidic cubic phase embedded membrane protein crystals. Nat Commun (2023)

Release Date

2023-03-08

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

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