SMTL ID : 8gt7.1

Structure of falcipain and human Stefin A mutant complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.28 Å

Oligo State

hetero-2-2-mer

Ligands

1 x LYS- GLU- ILE- VAL- ASN- PRO- LEU- THR- LYS: LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS(Non-covalent)

LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1: 6 residues within 4Å: Chain C: T.120 Ligands: GOL.170, GOL.218, GOL.219, PG4.222, PG4.223 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:T.120

1 x VAL- ASN- PRO- LEU- THR- LYS- LYS- GLY- GLU: VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU(Non-covalent)

VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2: 13 residues within 4Å: Chain C: E.5, Y.11, K.12, G.13, N.16, H.19 Ligands: PEG.162, PEG.171, PG4.232, PE8.233, GOL.234, PG4.236, PE8.237 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:N.16 Hydrogen bonds: C:Y.11, C:K.12 Water bridges: C:N.16, C:N.16

65 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: E.121 Ligands: PEG.203 Ligand excluded by PLIP GOL.4: 4 residues within 4Å: Chain A: K.76, E.94 Ligands: PEG.31, PEG.34 Ligand excluded by PLIP GOL.5: 5 residues within 4Å: Chain A: L.225, R.227, G.230 Ligands: PEG.33, GOL.63 Ligand excluded by PLIP GOL.6: 3 residues within 4Å: Chain A: N.14 Ligands: PEG.42, PE8.46 Ligand excluded by PLIP GOL.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP GOL.8: 3 residues within 4Å: Ligands: GOL.11, NA.58, PG4.98 Ligand excluded by PLIP GOL.9: 6 residues within 4Å: Chain A: D.72, C.80, A.110, P.111, N.112 Chain B: F.98 Ligand excluded by PLIP GOL.10: 1 residues within 4Å: Ligands: PE8.44 Ligand excluded by PLIP GOL.11: 2 residues within 4Å: Ligands: GOL.8, PEG.39 Ligand excluded by PLIP GOL.12: 5 residues within 4Å: Chain A: V.152, D.170, Q.171, N.173 Ligands: PG4.92 Ligand excluded by PLIP GOL.13: 4 residues within 4Å: Chain A: L.172, T.233 Ligands: GOL.16, GOL.63 Ligand excluded by PLIP GOL.14: 2 residues within 4Å: Chain A: D.170 Ligands: PE8.112 Ligand excluded by PLIP GOL.15: 5 residues within 4Å: Chain A: D.35, K.37, G.207, Q.209 Chain B: L.73 Ligand excluded by PLIP GOL.16: 4 residues within 4Å: Chain A: Q.171, L.172 Chain B: M.1 Ligands: GOL.13 Ligand excluded by PLIP GOL.47: 1 residues within 4Å: Chain A: K.192 Ligand excluded by PLIP GOL.49: 2 residues within 4Å: Chain A: P.132, N.134 Ligand excluded by PLIP GOL.63: 4 residues within 4Å: Ligands: GOL.5, GOL.13, PEG.33, PG4.70 Ligand excluded by PLIP GOL.64: 1 residues within 4Å: Ligands: PE8.44 Ligand excluded by PLIP GOL.65: 1 residues within 4Å: Ligands: PEG.42 Ligand excluded by PLIP GOL.74: 2 residues within 4Å: Ligands: PE8.44, PEG.72 Ligand excluded by PLIP GOL.77: 4 residues within 4Å: Chain A: Y.78 Chain B: M.1, I.2 Ligands: PEG.101 Ligand excluded by PLIP GOL.78: 2 residues within 4Å: Ligands: PG4.94, PEG.105 Ligand excluded by PLIP GOL.79: 3 residues within 4Å: Chain B: K.22 Ligands: PG4.99, GOL.114 Ligand excluded by PLIP GOL.80: 4 residues within 4Å: Chain B: E.8 Ligands: PG4.93, PEG.102, NA.120 Ligand excluded by PLIP GOL.81: 1 residues within 4Å: Ligands: PEG.131 Ligand excluded by PLIP GOL.82: 2 residues within 4Å: Chain B: N.77 Ligands: PG4.75 Ligand excluded by PLIP GOL.83: 5 residues within 4Å: Chain B: D.92, E.94 Ligands: GOL.86, PEG.102, PEG.109 Ligand excluded by PLIP GOL.84: 1 residues within 4Å: Chain B: D.79 Ligand excluded by PLIP GOL.85: 6 residues within 4Å: Chain B: E.15, E.18, I.19, Y.53, K.71 Ligands: EDO.117 Ligand excluded by PLIP GOL.86: 2 residues within 4Å: Chain B: D.92 Ligands: GOL.83 Ligand excluded by PLIP GOL.114: 3 residues within 4Å: Chain B: P.25 Ligands: GOL.79, PEG.103 Ligand excluded by PLIP GOL.126: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP GOL.127: 1 residues within 4Å: Ligands: PG4.97 Ligand excluded by PLIP GOL.128: 1 residues within 4Å: Ligands: PEG.71 Ligand excluded by PLIP GOL.136: 3 residues within 4Å: Chain C: L.26, G.182, Y.199 Ligand excluded by PLIP GOL.137: 2 residues within 4Å: Chain C: E.161, E.212 Ligand excluded by PLIP GOL.138: 4 residues within 4Å: Chain C: L.225, M.226, R.227, L.231 Ligand excluded by PLIP GOL.139: 6 residues within 4Å: Chain C: F.17, D.18, H.19, K.137, E.138, R.141 Ligand excluded by PLIP GOL.140: 1 residues within 4Å: Chain C: K.192 Ligand excluded by PLIP GOL.141: 4 residues within 4Å: Chain C: K.193, G.194, K.196 Ligands: PG4.155 Ligand excluded by PLIP GOL.142: 2 residues within 4Å: Chain C: K.59 Ligands: GOL.143 Ligand excluded by PLIP GOL.143: 2 residues within 4Å: Ligands: GOL.142, PEG.166 Ligand excluded by PLIP GOL.144: 3 residues within 4Å: Chain C: D.155, F.158 Ligands: PEG.206 Ligand excluded by PLIP GOL.145: 6 residues within 4Å: Chain C: I.93, I.125, K.126 Ligands: PG4.24, PEG.32, PG4.157 Ligand excluded by PLIP GOL.146: 2 residues within 4Å: Chain C: I.186, E.222 Ligand excluded by PLIP GOL.169: 4 residues within 4Å: Chain C: D.170 Chain D: K.10 Ligands: PG4.152, PE8.167 Ligand excluded by PLIP GOL.170: 5 residues within 4Å: Chain C: R.118, C.119 Ligands: LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, EDO.217 Ligand excluded by PLIP GOL.176: 4 residues within 4Å: Ligands: PG4.153, PG4.154, NA.175, EDO.180 Ligand excluded by PLIP GOL.177: 5 residues within 4Å: Ligands: PG4.152, PG4.153, PG4.154, SO4.158, PEG.178 Ligand excluded by PLIP GOL.179: 3 residues within 4Å: Ligands: PG4.152, PEG.178, PG4.198 Ligand excluded by PLIP GOL.185: 3 residues within 4Å: Chain D: G.75, Q.76, N.77 Ligand excluded by PLIP GOL.186: 2 residues within 4Å: Chain D: R.58 Ligands: PG4.196 Ligand excluded by PLIP GOL.187: 5 residues within 4Å: Chain A: D.102, P.105 Chain D: Y.85, Q.86, V.87 Ligand excluded by PLIP GOL.188: 5 residues within 4Å: Chain D: S.7, E.8 Ligands: PE8.167, EDO.180, PEG.184 Ligand excluded by PLIP GOL.189: 5 residues within 4Å: Chain D: R.58, G.60, D.61, N.62, Y.64 Ligand excluded by PLIP GOL.190: 5 residues within 4Å: Chain D: K.91 Ligands: EDO.118, GOL.191, PEG.207, GOL.216 Ligand excluded by PLIP GOL.191: 3 residues within 4Å: Ligands: GOL.190, PEG.207, GOL.216 Ligand excluded by PLIP GOL.192: 1 residues within 4Å: Chain D: E.29 Ligand excluded by PLIP GOL.210: 3 residues within 4Å: Chain D: G.36, K.37 Ligands: PG4.199 Ligand excluded by PLIP GOL.216: 3 residues within 4Å: Ligands: GOL.190, GOL.191, NA.211 Ligand excluded by PLIP GOL.218: 5 residues within 4Å: Ligands: LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, PG4.222, PE8.226 Ligand excluded by PLIP GOL.219: 4 residues within 4Å: Ligands: LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, PG4.222, GOL.229 Ligand excluded by PLIP GOL.220: 3 residues within 4Å: Ligands: PE8.44, PG4.223, PG4.230 Ligand excluded by PLIP GOL.229: 2 residues within 4Å: Ligands: GOL.219, PG4.222 Ligand excluded by PLIP GOL.234: 1 residues within 4Å: Ligands: VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2 Ligand excluded by PLIP

44 x NA: SODIUM ION(Non-functional Binders)

NA.17: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.18: 1 residues within 4Å: Chain A: S.153 Ligand excluded by PLIP NA.19: 1 residues within 4Å: Chain A: E.94 Ligand excluded by PLIP NA.20: 1 residues within 4Å: Ligands: PG4.23 Ligand excluded by PLIP NA.50: 1 residues within 4Å: Ligands: PEG.39 Ligand excluded by PLIP NA.51: 1 residues within 4Å: Ligands: PG4.68 Ligand excluded by PLIP NA.52: 1 residues within 4Å: Ligands: PG4.54 Ligand excluded by PLIP NA.56: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.57: 1 residues within 4Å: Ligands: PE8.44 Ligand excluded by PLIP NA.58: 2 residues within 4Å: Ligands: GOL.8, PG4.98 Ligand excluded by PLIP NA.59: 1 residues within 4Å: Ligands: SO4.30 Ligand excluded by PLIP NA.60: 3 residues within 4Å: Ligands: PG4.27, PEG.38, PE8.44 Ligand excluded by PLIP NA.61: 1 residues within 4Å: Ligands: PG4.28 Ligand excluded by PLIP NA.62: 1 residues within 4Å: Chain A: D.154 Ligand excluded by PLIP NA.87: 1 residues within 4Å: Chain B: D.61 Ligand excluded by PLIP NA.88: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.89: 1 residues within 4Å: Chain B: F.98 Ligand excluded by PLIP NA.115: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.119: 1 residues within 4Å: Ligands: PG4.96 Ligand excluded by PLIP NA.120: 1 residues within 4Å: Ligands: GOL.80 Ligand excluded by PLIP NA.121: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.122: 1 residues within 4Å: Ligands: PG4.129 Ligand excluded by PLIP NA.123: 1 residues within 4Å: Ligands: PG4.97 Ligand excluded by PLIP NA.124: 1 residues within 4Å: Ligands: PG4.95 Ligand excluded by PLIP NA.125: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.147: 2 residues within 4Å: Chain C: S.153 Ligands: PEG.206 Ligand excluded by PLIP NA.148: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.149: 1 residues within 4Å: Ligands: PG4.168 Ligand excluded by PLIP NA.150: 1 residues within 4Å: Chain C: M.183 Ligand excluded by PLIP NA.172: 1 residues within 4Å: Ligands: PG4.151 Ligand excluded by PLIP NA.173: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.174: 1 residues within 4Å: Ligands: EDO.181 Ligand excluded by PLIP NA.175: 2 residues within 4Å: Ligands: PG4.153, GOL.176 Ligand excluded by PLIP NA.193: 1 residues within 4Å: Chain D: L.82 Ligand excluded by PLIP NA.194: 1 residues within 4Å: Chain D: K.30 Ligand excluded by PLIP NA.208: 2 residues within 4Å: Chain D: E.15, E.18 Ligand excluded by PLIP NA.211: 1 residues within 4Å: Ligands: GOL.216 Ligand excluded by PLIP NA.212: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.213: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.214: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.215: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.228: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.235: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.238: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

48 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.21: 3 residues within 4Å: Ligands: PG4.25, PEG.36, PE8.112 Ligand excluded by PLIP PG4.22: 3 residues within 4Å: Chain A: K.59, N.60 Ligands: EDO.217 Ligand excluded by PLIP PG4.23: 6 residues within 4Å: Chain A: Q.1, M.2, N.3, E.6 Ligands: NA.20, PEG.39 Ligand excluded by PLIP PG4.24: 4 residues within 4Å: Chain A: E.185, V.187 Ligands: PEG.32, GOL.145 Ligand excluded by PLIP PG4.25: 3 residues within 4Å: Ligands: PG4.21, PEG.36, PG4.75 Ligand excluded by PLIP PG4.26: 2 residues within 4Å: Chain A: L.190 Ligands: PG4.67 Ligand excluded by PLIP PG4.27: 5 residues within 4Å: Chain A: K.126, I.240, E.241 Ligands: PEG.38, NA.60 Ligand excluded by PLIP PG4.28: 3 residues within 4Å: Chain A: E.167 Ligands: NA.61, PG4.69 Ligand excluded by PLIP PG4.54: 4 residues within 4Å: Chain A: E.161 Chain C: N.86, N.87 Ligands: NA.52 Ligand excluded by PLIP PG4.66: 3 residues within 4Å: Ligands: PE8.46, PEG.72, PEG.73 Ligand excluded by PLIP PG4.67: 2 residues within 4Å: Ligands: PG4.26, PG4.151 Ligand excluded by PLIP PG4.68: 1 residues within 4Å: Ligands: NA.51 Ligand excluded by PLIP PG4.69: 1 residues within 4Å: Ligands: PG4.28 Ligand excluded by PLIP PG4.70: 2 residues within 4Å: Ligands: PEG.33, GOL.63 Ligand excluded by PLIP PG4.75: 5 residues within 4Å: Ligands: PG4.25, PEG.36, PEG.71, GOL.82, PEG.113 Ligand excluded by PLIP PG4.90: 1 residues within 4Å: Ligands: PE8.110 Ligand excluded by PLIP PG4.91: 6 residues within 4Å: Chain B: N.32, E.33, T.34 Ligands: PE8.76, PEG.100, PEG.106 Ligand excluded by PLIP PG4.92: 6 residues within 4Å: Chain B: S.7, K.10, T.45 Ligands: GOL.12, PEG.37, PG4.93 Ligand excluded by PLIP PG4.93: 9 residues within 4Å: Chain A: Q.171 Chain B: E.8, A.9, K.10, P.11 Ligands: PEG.37, GOL.80, PG4.92, PG4.94 Ligand excluded by PLIP PG4.94: 3 residues within 4Å: Chain B: P.11 Ligands: GOL.78, PG4.93 Ligand excluded by PLIP PG4.95: 5 residues within 4Å: Ligands: PG4.96, NA.124, PG4.129, PEG.131, PEG.132 Ligand excluded by PLIP PG4.96: 5 residues within 4Å: Chain B: P.14 Ligands: PG4.95, PEG.105, NA.119, PG4.129 Ligand excluded by PLIP PG4.97: 2 residues within 4Å: Ligands: NA.123, GOL.127 Ligand excluded by PLIP PG4.98: 3 residues within 4Å: Chain B: M.1 Ligands: GOL.8, NA.58 Ligand excluded by PLIP PG4.99: 2 residues within 4Å: Chain B: E.78 Ligands: GOL.79 Ligand excluded by PLIP PG4.129: 4 residues within 4Å: Ligands: PG4.95, PG4.96, NA.122, PEG.131 Ligand excluded by PLIP PG4.134: 4 residues within 4Å: Chain C: T.191, K.192 Ligands: PG4.155, EDO.181 Ligand excluded by PLIP PG4.151: 4 residues within 4Å: Chain C: I.93 Ligands: PEG.32, PG4.67, NA.172 Ligand excluded by PLIP PG4.152: 8 residues within 4Å: Chain C: D.170 Ligands: PG4.154, PE8.167, GOL.169, GOL.177, PEG.178, GOL.179, PEG.202 Ligand excluded by PLIP PG4.153: 7 residues within 4Å: Chain C: D.170, Q.171 Ligands: PG4.154, SO4.158, NA.175, GOL.176, GOL.177 Ligand excluded by PLIP PG4.154: 9 residues within 4Å: Chain C: G.169, D.170, K.228 Ligands: PG4.152, PG4.153, SO4.158, PE8.167, GOL.176, GOL.177 Ligand excluded by PLIP PG4.155: 4 residues within 4Å: Chain C: E.167 Ligands: PG4.134, GOL.141, EDO.181 Ligand excluded by PLIP PG4.156: 3 residues within 4Å: Chain C: Q.208, Q.209, R.213 Ligand excluded by PLIP PG4.157: 5 residues within 4Å: Chain C: M.92, G.96, K.122 Ligands: GOL.145, PEG.166 Ligand excluded by PLIP PG4.168: 6 residues within 4Å: Chain C: L.84, N.86, L.172, T.233, D.234 Ligands: NA.149 Ligand excluded by PLIP PG4.182: 7 residues within 4Å: Chain D: E.15, E.18, I.19, K.22, Y.53, K.71, E.78 Ligand excluded by PLIP PG4.195: 3 residues within 4Å: Chain D: G.60, D.61 Ligands: PG4.199 Ligand excluded by PLIP PG4.196: 3 residues within 4Å: Chain D: V.41 Ligands: GOL.186, PEG.205 Ligand excluded by PLIP PG4.197: 2 residues within 4Å: Chain D: T.34 Ligands: PEG.201 Ligand excluded by PLIP PG4.198: 5 residues within 4Å: Chain D: P.11 Ligands: PEG.178, GOL.179, PEG.202, PEG.205 Ligand excluded by PLIP PG4.199: 7 residues within 4Å: Chain D: Y.35, K.37, E.39 Ligands: PG4.195, PEG.200, PEG.201, GOL.210 Ligand excluded by PLIP PG4.221: 2 residues within 4Å: Ligands: PE8.226, PG4.230 Ligand excluded by PLIP PG4.222: 6 residues within 4Å: Ligands: LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, GOL.218, GOL.219, PE8.226, GOL.229 Ligand excluded by PLIP PG4.223: 4 residues within 4Å: Chain A: F.17 Ligands: LYS-GLU-ILE-VAL-ASN-PRO-LEU-THR-LYS.1, PEG.35, GOL.220 Ligand excluded by PLIP PG4.230: 3 residues within 4Å: Ligands: GOL.220, PG4.221, PE8.226 Ligand excluded by PLIP PG4.231: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PG4.232: 1 residues within 4Å: Ligands: VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2 Ligand excluded by PLIP PG4.236: 4 residues within 4Å: Chain C: K.10, Y.11 Ligands: VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, PE8.233 Ligand excluded by PLIP

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.29: 1 residues within 4Å: Chain A: K.59 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.59 SO4.30: 2 residues within 4Å: Ligands: PEG.42, NA.59 No protein-ligand interaction detected (PLIP) SO4.133: 8 residues within 4Å: Chain A: R.25, L.26 Chain C: C.73, S.74, F.75, K.76, D.91, L.95 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:F.75, C:K.76 Water bridges: C:F.75, A:R.25 Salt bridges: C:K.76, A:R.25 SO4.158: 4 residues within 4Å: Chain C: K.228 Ligands: PG4.153, PG4.154, GOL.177 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:K.228 SO4.224: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

54 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.31: 4 residues within 4Å: Chain A: E.90, E.94 Ligands: GOL.4, PEG.34 Ligand excluded by PLIP PEG.32: 4 residues within 4Å: Chain A: E.185 Ligands: PG4.24, GOL.145, PG4.151 Ligand excluded by PLIP PEG.33: 3 residues within 4Å: Ligands: GOL.5, GOL.63, PG4.70 Ligand excluded by PLIP PEG.34: 3 residues within 4Å: Chain A: E.90 Ligands: GOL.4, PEG.31 Ligand excluded by PLIP PEG.35: 4 residues within 4Å: Chain A: E.15, N.16, F.17 Ligands: PG4.223 Ligand excluded by PLIP PEG.36: 5 residues within 4Å: Chain A: F.158 Ligands: PG4.21, PG4.25, PEG.71, PG4.75 Ligand excluded by PLIP PEG.37: 4 residues within 4Å: Chain A: D.170, Q.171 Ligands: PG4.92, PG4.93 Ligand excluded by PLIP PEG.38: 3 residues within 4Å: Ligands: PG4.27, PE8.44, NA.60 Ligand excluded by PLIP PEG.39: 5 residues within 4Å: Chain A: Q.1, N.3 Ligands: GOL.11, PG4.23, NA.50 Ligand excluded by PLIP PEG.40: 3 residues within 4Å: Chain A: D.102 Chain C: P.111 Chain D: F.98 Ligand excluded by PLIP PEG.41: 5 residues within 4Å: Chain A: D.109, A.110, P.111 Chain B: R.68, T.83 Ligand excluded by PLIP PEG.42: 7 residues within 4Å: Chain A: K.9, G.13, N.14 Ligands: GOL.6, SO4.30, PEG.43, GOL.65 Ligand excluded by PLIP PEG.43: 3 residues within 4Å: Chain A: G.13, N.14 Ligands: PEG.42 Ligand excluded by PLIP PEG.48: 2 residues within 4Å: Chain A: D.117 Ligands: PE8.45 Ligand excluded by PLIP PEG.55: 3 residues within 4Å: Chain A: D.103, R.118 Chain D: N.32 Ligand excluded by PLIP PEG.71: 3 residues within 4Å: Ligands: PEG.36, PG4.75, GOL.128 Ligand excluded by PLIP PEG.72: 3 residues within 4Å: Ligands: PE8.46, PG4.66, GOL.74 Ligand excluded by PLIP PEG.73: 2 residues within 4Å: Ligands: PE8.46, PG4.66 Ligand excluded by PLIP PEG.100: 4 residues within 4Å: Chain B: G.60, D.61 Ligands: PE8.76, PG4.91 Ligand excluded by PLIP PEG.101: 2 residues within 4Å: Chain B: M.1 Ligands: GOL.77 Ligand excluded by PLIP PEG.102: 2 residues within 4Å: Ligands: GOL.80, GOL.83 Ligand excluded by PLIP PEG.103: 6 residues within 4Å: Chain B: P.25, Q.26, L.27, E.29 Ligands: GOL.114, EDO.118 Ligand excluded by PLIP PEG.104: 2 residues within 4Å: Chain B: V.41, Q.42 Ligand excluded by PLIP PEG.105: 4 residues within 4Å: Chain B: P.11, A.12 Ligands: GOL.78, PG4.96 Ligand excluded by PLIP PEG.106: 5 residues within 4Å: Chain B: E.33, A.59, K.63, D.88 Ligands: PG4.91 Ligand excluded by PLIP PEG.107: 4 residues within 4Å: Chain B: L.27, K.30, Y.85, Q.86 Ligand excluded by PLIP PEG.108: 3 residues within 4Å: Chain B: E.29, K.30, L.82 Ligand excluded by PLIP PEG.109: 3 residues within 4Å: Chain B: D.92 Ligands: GOL.83, PE8.110 Ligand excluded by PLIP PEG.113: 1 residues within 4Å: Ligands: PG4.75 Ligand excluded by PLIP PEG.116: 1 residues within 4Å: Ligands: PEG.132 Ligand excluded by PLIP PEG.130: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PEG.131: 3 residues within 4Å: Ligands: GOL.81, PG4.95, PG4.129 Ligand excluded by PLIP PEG.132: 2 residues within 4Å: Ligands: PG4.95, PEG.116 Ligand excluded by PLIP PEG.135: 1 residues within 4Å: Chain C: N.134 Ligand excluded by PLIP PEG.159: 2 residues within 4Å: Chain C: N.127 Ligands: PEG.160 Ligand excluded by PLIP PEG.160: 3 residues within 4Å: Chain C: Y.128, K.135 Ligands: PEG.159 Ligand excluded by PLIP PEG.161: 4 residues within 4Å: Chain C: M.2, N.3, Y.4, E.6 Ligand excluded by PLIP PEG.162: 3 residues within 4Å: Chain C: Y.11 Ligands: VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, PE8.233 Ligand excluded by PLIP PEG.163: 3 residues within 4Å: Chain C: Y.4, F.17, D.18 Ligand excluded by PLIP PEG.164: 4 residues within 4Å: Chain C: D.221, L.225, M.226 Ligands: PE8.237 Ligand excluded by PLIP PEG.165: 8 residues within 4Å: Chain C: T.31, P.32, K.34, E.52, T.64, E.67, M.177, K.203 Ligand excluded by PLIP PEG.166: 3 residues within 4Å: Chain C: K.126 Ligands: GOL.143, PG4.157 Ligand excluded by PLIP PEG.171: 3 residues within 4Å: Chain C: Y.11 Ligands: VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2 Ligand excluded by PLIP PEG.178: 4 residues within 4Å: Ligands: PG4.152, GOL.177, GOL.179, PG4.198 Ligand excluded by PLIP PEG.183: 1 residues within 4Å: Chain D: D.79 Ligand excluded by PLIP PEG.184: 8 residues within 4Å: Chain B: Q.76 Chain D: M.1, L.6, S.7, E.8, K.44, E.94 Ligands: GOL.188 Ligand excluded by PLIP PEG.200: 1 residues within 4Å: Ligands: PG4.199 Ligand excluded by PLIP PEG.201: 5 residues within 4Å: Chain D: N.32, E.33, T.34 Ligands: PG4.197, PG4.199 Ligand excluded by PLIP PEG.202: 2 residues within 4Å: Ligands: PG4.152, PG4.198 Ligand excluded by PLIP PEG.203: 3 residues within 4Å: Chain D: Y.85 Ligands: GOL.3, PEG.204 Ligand excluded by PLIP PEG.204: 3 residues within 4Å: Chain D: K.30, Y.85 Ligands: PEG.203 Ligand excluded by PLIP PEG.205: 5 residues within 4Å: Chain D: P.11, A.12, T.13 Ligands: PG4.196, PG4.198 Ligand excluded by PLIP PEG.206: 2 residues within 4Å: Ligands: GOL.144, NA.147 Ligand excluded by PLIP PEG.207: 2 residues within 4Å: Ligands: GOL.190, GOL.191 Ligand excluded by PLIP

12 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-functional Binders)(Non-covalent)

PE8.44: 7 residues within 4Å: Ligands: GOL.10, PEG.38, NA.57, NA.60, GOL.64, GOL.74, GOL.220 No protein-ligand interaction detected (PLIP) PE8.45: 1 residues within 4Å: Ligands: PEG.48 No protein-ligand interaction detected (PLIP) PE8.46: 4 residues within 4Å: Ligands: GOL.6, PG4.66, PEG.72, PEG.73 No protein-ligand interaction detected (PLIP) PE8.76: 2 residues within 4Å: Ligands: PG4.91, PEG.100 No protein-ligand interaction detected (PLIP) PE8.110: 7 residues within 4Å: Chain B: N.62, Y.64, N.90, K.91, D.92 Ligands: PG4.90, PEG.109 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.90 PE8.111: 4 residues within 4Å: Chain B: E.15 Ligands: EDO.53, PE8.112, EDO.117 No protein-ligand interaction detected (PLIP) PE8.112: 5 residues within 4Å: Chain B: T.13 Ligands: GOL.14, PG4.21, EDO.53, PE8.111 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.13 PE8.167: 6 residues within 4Å: Chain C: Q.171 Ligands: PG4.152, PG4.154, GOL.169, EDO.180, GOL.188 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.171 PE8.225: 1 residues within 4Å: Ligands: EDO.227 No protein-ligand interaction detected (PLIP) PE8.226: 4 residues within 4Å: Ligands: GOL.218, PG4.221, PG4.222, PG4.230 No protein-ligand interaction detected (PLIP) PE8.233: 7 residues within 4Å: Ligands: VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, PEG.162, PG4.236, PE8.237 No protein-ligand interaction detected (PLIP) PE8.237: 11 residues within 4Å: Chain C: S.223, L.225, M.226 Ligands: VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, VAL-ASN-PRO-LEU-THR-LYS-LYS-GLY-GLU.2, PEG.164, PE8.233 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.223

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.53: 2 residues within 4Å: Ligands: PE8.111, PE8.112 No protein-ligand interaction detected (PLIP) EDO.117: 2 residues within 4Å: Ligands: GOL.85, PE8.111 No protein-ligand interaction detected (PLIP) EDO.118: 2 residues within 4Å: Ligands: PEG.103, GOL.190 No protein-ligand interaction detected (PLIP) EDO.180: 3 residues within 4Å: Ligands: PE8.167, GOL.176, GOL.188 No protein-ligand interaction detected (PLIP) EDO.181: 5 residues within 4Å: Chain C: K.192, K.193 Ligands: PG4.134, PG4.155, NA.174 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.193 EDO.209: 1 residues within 4Å: Chain D: K.30 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:K.30 EDO.217: 2 residues within 4Å: Ligands: PG4.22, GOL.170 No protein-ligand interaction detected (PLIP) EDO.227: 1 residues within 4Å: Ligands: PE8.225 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chakraborty, S. et al., Structure of falcipain and human Stefin A complex. To Be Published

Release Date

2023-09-13

Peptides

Cysteine proteinase falcipain 2a: AC
Cystatin-A: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Cysteine proteinase falcipain 2a

Cystatin-A

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