SMTL ID : 8h9f.1

Human ATP synthase state 1 subregion 3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-8-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x CDL: CARDIOLIPIN(Non-covalent)

CDL.1: 23 residues within 4Å: Chain L: Y.14, L.16, M.67, V.68, G.70, I.71, K.72, Y.74, G.75, P.76, V.78 Chain N: R.41, L.42, T.45, L.84, L.85, L.88, I.204 Chain Q: G.60, S.61, I.62, T.66, A.70 12 PLIP interactions: 6 interactions with chain N, 4 interactions with chain L, 2 interactions with chain Q Hydrophobic interactions: N:R.41, N:L.42, N:L.84, N:L.85, N:L.88, N:I.204, L:V.68, L:I.71, Q:I.62 Hydrogen bonds: L:I.71, Q:I.62 Salt bridges: L:K.72 CDL.3: 18 residues within 4Å: Chain L: L.16, I.17, P.18, E.20, F.21, F.22, F.24, P.34, G.38 Chain Q: G.46, R.49, Y.50, K.53, Y.54, M.67, A.70 Chain R: K.70, V.73 14 PLIP interactions: 7 interactions with chain Q, 1 interactions with chain R, 6 interactions with chain L Hydrophobic interactions: Q:Y.50, Q:Y.50, Q:Y.54, Q:A.70, L:I.17, L:F.21, L:F.21, L:F.21, L:F.21, L:F.22 Salt bridges: Q:K.21, Q:R.49, Q:K.53, R:K.70

1 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Non-covalent)

3PH.2: 12 residues within 4Å: Chain N: L.25, L.29, P.32, T.33 Chain P: I.23, K.27 Chain Q: F.43, Q.44, Y.47, Y.48, Y.50, V.68 14 PLIP interactions: 7 interactions with chain Q, 5 interactions with chain N, 2 interactions with chain P Hydrophobic interactions: Q:Y.47, Q:Y.47, Q:Y.47, Q:Y.50, Q:V.68, N:P.32 Hydrogen bonds: Q:Y.47, Q:Y.48, N:T.33, N:T.33, N:T.33, N:T.33 Salt bridges: P:K.27, P:K.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, Y. et al., Structure of the human ATP synthase. Mol.Cell (2023)

Release Date

2023-08-30

Peptides

ATP synthase F(0) complex subunit C1, mitochondrial: ABCDEFGH
ATP synthase subunit gamma, mitochondrial: I
ATP synthase subunit delta, mitochondrial: J
ATP synthase subunit epsilon, mitochondrial: K
ATP synthase F(0) complex subunit B1, mitochondrial: L
ATP synthase subunit d, mitochondrial: M
ATP synthase subunit a: N
ATP synthase subunit ATP5MJ, mitochondrial: O
ATP synthase protein 8: P
ATP synthase subunit f, mitochondrial: Q
ATP synthase subunit g, mitochondrial: R
ATP synthase subunit e, mitochondrial: S

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
5

F
6

G
7

H
8

I
G

J
H

K
I

L
K

M
M

N
N

O
P

P
Q

Q
R

R
S

S
T

Membrane

We predict this structure to be a membrane protein.
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ATP synthase F(0) complex subunit C1, mitochondrial

ATP synthase subunit gamma, mitochondrial

ATP synthase subunit delta, mitochondrial

ATP synthase subunit epsilon, mitochondrial

ATP synthase F(0) complex subunit B1, mitochondrial

ATP synthase subunit d, mitochondrial

ATP synthase subunit a

ATP synthase subunit ATP5MJ, mitochondrial

ATP synthase protein 8

ATP synthase subunit f, mitochondrial

ATP synthase subunit g, mitochondrial

ATP synthase subunit e, mitochondrial

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