SMTL ID : 8hnd.1

Cryo-EM structure of human OATP1B1 in complex with estrone-3-sulfate

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: K.490, S.491, N.503 No protein-ligand interaction detected (PLIP)

1 x FY5: estrone 3-sulfate(Non-covalent)

FY5.2: 15 residues within 4Å: Chain A: P.220, F.224, Y.352, A.355, F.356, V.359, L.378, I.383, F.386, Y.422, Y.425, Q.541, N.544, L.545, Y.625 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.224, A:F.356, A:F.356, A:F.356, A:L.378, A:I.383, A:F.386, A:L.545, A:L.545 Hydrogen bonds: A:Q.541, A:N.544, A:Y.625

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.514, R.515, N.516 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shan, Z. et al., Cryo-EM structures of human organic anion transporting polypeptide OATP1B1. Cell Res. (2023)

Release Date

2023-09-13

Peptides

Solute carrier organic anion transporter family member 1B1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Solute carrier organic anion transporter family member 1B1

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