SMTL ID : 8hnh.1

Cryo-EM structure of human OATP1B1 in complex with simeprevir

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: Y.502, N.503 No protein-ligand interaction detected (PLIP)

1 x 30B: (2R,3aR,10Z,11aS,12aR,14aR)-N-(cyclopropylsulfonyl)-2-({7-methoxy-8-methyl-2-[4-(1-methylethyl)-1,3-thiazol-2-yl]quinolin-4-yl}oxy)-5-methyl-4,14-dioxo-2,3,3a,4,5,6,7,8,9,11a,12,13,14,14a-tetradecahydrocyclopenta[c]cyclopropa[g][1,6]diazacyclotetradecine-12a(1H)-carboxamide(Non-covalent)

30B.2: 14 residues within 4Å: Chain A: F.38, K.41, T.42, A.45, N.213, F.224, Y.352, I.353, F.356, G.379, I.383, V.556, I.579, R.580 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.42, A:F.224, A:Y.352, A:I.383, A:V.556, A:R.580 Hydrogen bonds: A:N.213 pi-Stacking: A:F.356

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.516 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.516

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shan, Z. et al., Cryo-EM structures of human organic anion transporting polypeptide OATP1B1. Cell Res. (2023)

Release Date

2023-09-13

Peptides

Solute carrier organic anion transporter family member 1B1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Solute carrier organic anion transporter family member 1B1

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