SMTL ID : 8hpy.1 (1 other biounit)

Crystal structure of human LGI1-ADAM22 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 5.87 Å

Oligo State

hetero-1-1-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: S.285, N.287 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.285, A:N.287 NAG.2: 3 residues within 4Å: Chain A: N.375, I.389, N.402 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.402 NAG.3: 1 residues within 4Å: Chain A: N.443 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain B: G.158, T.160, N.161 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.161 NAG.8: 5 residues within 4Å: Chain B: Q.223, K.228, I.230, N.243, N.246 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.223, B:N.243, B:N.246 NAG.9: 4 residues within 4Å: Chain B: T.390, N.391, Q.392, T.393 No protein-ligand interaction detected (PLIP)

4 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: Y.8, E.10, D.93, C.201, N.204 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.10, A:D.93, A:C.201 CA.5: 6 residues within 4Å: Chain A: E.214, N.217, F.219, E.221, E.224, D.227 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.214, A:F.219, A:E.221, A:E.224, A:D.227 CA.6: 5 residues within 4Å: Chain A: D.279, I.280, E.282, N.294, I.295 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.279, A:D.279, A:I.280, A:E.282, A:E.282 CA.10: 6 residues within 4Å: Chain B: D.303, E.305, D.350, V.351, E.352, K.405 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.303, B:E.305, B:D.350, B:V.351, B:E.352

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., Crystal structure of human LGI1-ADAM22 complex. To Be Published

Release Date

2023-12-13

Peptides

Disintegrin and metalloproteinase domain-containing protein 22: A
Leucine-rich glioma-inactivated protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Disintegrin and metalloproteinase domain-containing protein 22

Leucine-rich glioma-inactivated protein 1

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