SMTL ID : 8i22.1

Acyl-ACP synthetase structure bound to pimelic acid monoethyl ester

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x OBK: 7-ethoxy-7-oxidanylidene-heptanoic acid(Non-covalent)

OBK.1: 11 residues within 4Å: Chain A: H.226, V.227, W.230, G.295, G.317, Y.318, G.319, M.320, P.325, I.326, I.329 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.227, A:P.325, A:I.326, A:I.329 Hydrogen bonds: A:W.230 Salt bridges: A:H.226 OBK.2: 11 residues within 4Å: Chain B: H.226, V.227, W.230, G.295, G.317, Y.318, G.319, M.320, P.325, I.326, I.329 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.227, B:P.325, B:I.326, B:I.329 Salt bridges: B:H.226 OBK.3: 11 residues within 4Å: Chain C: H.226, V.227, W.230, G.295, G.317, Y.318, G.319, M.320, P.325, I.326, I.329 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:V.227, C:P.325, C:I.326, C:I.329 Salt bridges: C:H.226 OBK.4: 11 residues within 4Å: Chain D: H.226, V.227, W.230, G.295, G.317, Y.318, G.319, M.320, P.325, I.326, I.329 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:V.227, D:P.325, D:I.326, D:I.329 Hydrogen bonds: D:W.230 Salt bridges: D:H.226 OBK.5: 11 residues within 4Å: Chain E: H.226, V.227, W.230, G.295, G.317, Y.318, G.319, M.320, P.325, I.326, I.329 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:V.227, E:P.325, E:I.326, E:I.329 Salt bridges: E:H.226 OBK.6: 11 residues within 4Å: Chain F: H.226, V.227, W.230, G.295, G.317, Y.318, G.319, M.320, P.325, I.326, I.329 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:V.227, F:P.325, F:I.326, F:I.329 Hydrogen bonds: F:W.230 Salt bridges: F:H.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Acyl-ACP synthetase structure bound to pimelic acid monoethyl ester. To Be Published

Release Date

2024-01-17

Peptides

Acyl-acyl carrier protein synthetase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
B

D
C

E
D

F
E

Acyl-acyl carrier protein synthetase

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