SMTL ID : 8i6m.1

Acyl-ACP synthetase structure bound to AMP-C18:1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 19 residues within 4Å: Chain A: I.199, L.200, I.203, L.212, H.226, V.227, W.230, L.232, M.235, F.265, V.293, G.295, G.317, Y.318, G.319, M.320, P.325, I.326 Ligands: AMP.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.200, A:I.203, A:L.212, A:V.227, A:V.227, A:W.230, A:W.230, A:W.230, A:L.232, A:F.265, A:P.325, A:P.325, A:I.326, A:I.326 OLA.4: 19 residues within 4Å: Chain B: I.199, L.200, I.203, L.212, H.226, V.227, W.230, L.232, M.235, F.265, V.293, G.295, G.317, Y.318, G.319, M.320, P.325, I.326 Ligands: AMP.5 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.200, B:I.203, B:L.212, B:V.227, B:V.227, B:W.230, B:W.230, B:W.230, B:L.232, B:F.265, B:P.325, B:P.325, B:I.326, B:I.326 OLA.7: 19 residues within 4Å: Chain C: I.199, L.200, I.203, L.212, H.226, V.227, W.230, L.232, M.235, F.265, V.293, G.295, G.317, Y.318, G.319, M.320, P.325, I.326 Ligands: AMP.8 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:L.200, C:I.203, C:L.212, C:V.227, C:V.227, C:W.230, C:W.230, C:W.230, C:L.232, C:F.265, C:P.325, C:P.325, C:I.326, C:I.326 OLA.10: 19 residues within 4Å: Chain D: I.199, L.200, I.203, L.212, H.226, V.227, W.230, L.232, M.235, F.265, V.293, G.295, G.317, Y.318, G.319, M.320, P.325, I.326 Ligands: AMP.11 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:L.200, D:I.203, D:L.212, D:V.227, D:V.227, D:W.230, D:W.230, D:W.230, D:L.232, D:F.265, D:P.325, D:P.325, D:I.326, D:I.326 OLA.13: 19 residues within 4Å: Chain E: I.199, L.200, I.203, L.212, H.226, V.227, W.230, L.232, M.235, F.265, V.293, G.295, G.317, Y.318, G.319, M.320, P.325, I.326 Ligands: AMP.14 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:L.200, E:I.203, E:L.212, E:V.227, E:V.227, E:W.230, E:W.230, E:W.230, E:L.232, E:F.265, E:P.325, E:P.325, E:I.326, E:I.326 OLA.16: 19 residues within 4Å: Chain F: I.199, L.200, I.203, L.212, H.226, V.227, W.230, L.232, M.235, F.265, V.293, G.295, G.317, Y.318, G.319, M.320, P.325, I.326 Ligands: AMP.17 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:L.200, F:I.203, F:L.212, F:V.227, F:V.227, F:W.230, F:W.230, F:W.230, F:L.232, F:F.265, F:P.325, F:P.325, F:I.326, F:I.326

6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 13 residues within 4Å: Chain A: T.175, G.295, G.296, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, R.426 Ligands: OLA.1, MG.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.175, A:G.295, A:A.298, A:G.319, A:D.411, A:R.426 pi-Stacking: A:Y.318, A:Y.318 AMP.5: 13 residues within 4Å: Chain B: T.175, G.295, G.296, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, R.426 Ligands: OLA.4, MG.6 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.175, B:G.295, B:A.298, B:Y.318, B:G.319, B:S.321, B:D.411, B:R.426 pi-Stacking: B:Y.318, B:Y.318 AMP.8: 13 residues within 4Å: Chain C: T.175, G.295, G.296, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, R.426 Ligands: OLA.7, MG.9 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:T.175, C:G.295, C:A.298, C:Y.318, C:G.319, C:S.321, C:D.411, C:R.426 pi-Stacking: C:Y.318, C:Y.318 AMP.11: 13 residues within 4Å: Chain D: T.175, G.295, G.296, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, R.426 Ligands: OLA.10, MG.12 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:T.175, D:G.295, D:A.298, D:G.319, D:D.411, D:R.426 pi-Stacking: D:Y.318, D:Y.318 AMP.14: 13 residues within 4Å: Chain E: T.175, G.295, G.296, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, R.426 Ligands: OLA.13, MG.15 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:T.175, E:G.295, E:A.298, E:Y.318, E:G.319, E:S.321, E:D.411, E:R.426 pi-Stacking: E:Y.318, E:Y.318 AMP.17: 13 residues within 4Å: Chain F: T.175, G.295, G.296, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, R.426 Ligands: OLA.16, MG.18 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:T.175, F:G.295, F:A.298, F:G.319, F:D.411, F:R.426 pi-Stacking: F:Y.318, F:Y.318

6 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: T.175, M.320, S.321, E.322 Ligands: AMP.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:M.320, A:S.321, A:E.322, AMP.2 MG.6: 5 residues within 4Å: Chain B: T.175, M.320, S.321, E.322 Ligands: AMP.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:M.320, B:S.321, B:E.322 MG.9: 5 residues within 4Å: Chain C: T.175, M.320, S.321, E.322 Ligands: AMP.8 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:M.320, C:S.321, C:E.322 MG.12: 5 residues within 4Å: Chain D: T.175, M.320, S.321, E.322 Ligands: AMP.11 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Ligand interactions Metal complexes: D:M.320, D:S.321, D:E.322, AMP.11 MG.15: 5 residues within 4Å: Chain E: T.175, M.320, S.321, E.322 Ligands: AMP.14 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:M.320, E:S.321, E:E.322 MG.18: 5 residues within 4Å: Chain F: T.175, M.320, S.321, E.322 Ligands: AMP.17 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Ligand interactions Metal complexes: F:M.320, F:S.321, F:E.322, AMP.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Acyl-ACP synthetase structure bound to AMP-C18:1. To Be Published

Release Date

2024-01-31

Peptides

Acyl-acyl carrier protein synthetase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
D

D
C

E
B

F
E

Acyl-acyl carrier protein synthetase

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