SMTL ID : 8i3i.1

Acyl-ACP synthetase structure bound to AMP-PNP in the presence of MgCl2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: ANP.2 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Ligands: ANP.4 No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Ligands: ANP.6 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Ligands: ANP.8 No protein-ligand interaction detected (PLIP)

4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 21 residues within 4Å: Chain A: T.175, T.176, G.177, T.178, T.179, K.183, H.226, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, I.423, R.426, K.522 Ligands: MG.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.175, A:T.176, A:G.177, A:T.178, A:T.179, A:T.179, A:K.183, A:A.298, A:G.317, A:S.321, A:D.411, A:R.426, A:R.426, A:K.522 Salt bridges: A:H.226, A:K.522 pi-Stacking: A:Y.318 ANP.4: 21 residues within 4Å: Chain B: T.175, T.176, G.177, T.178, T.179, K.183, H.226, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, I.423, R.426, K.522 Ligands: MG.3 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:T.175, B:T.175, B:T.176, B:G.177, B:T.178, B:T.179, B:T.179, B:K.183, B:A.298, B:G.317, B:S.321, B:D.411, B:R.426, B:R.426, B:K.522 Salt bridges: B:H.226, B:K.522 pi-Stacking: B:Y.318 ANP.6: 21 residues within 4Å: Chain C: T.175, T.176, G.177, T.178, T.179, K.183, H.226, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, I.423, R.426, K.522 Ligands: MG.5 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:T.175, C:T.176, C:G.177, C:T.178, C:T.179, C:T.179, C:K.183, C:A.298, C:G.317, C:S.321, C:D.411, C:R.426, C:R.426, C:K.522 Salt bridges: C:H.226, C:K.522 pi-Stacking: C:Y.318 ANP.8: 21 residues within 4Å: Chain D: T.175, T.176, G.177, T.178, T.179, K.183, H.226, G.295, G.296, A.297, A.298, G.317, Y.318, G.319, M.320, S.321, D.411, I.423, R.426, K.522 Ligands: MG.7 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:T.175, D:T.175, D:T.176, D:G.177, D:T.178, D:T.179, D:T.179, D:K.183, D:A.298, D:G.317, D:S.321, D:D.411, D:R.426, D:R.426, D:K.522 Salt bridges: D:H.226, D:K.522 pi-Stacking: D:Y.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, H. et al., Acyl-ACP synthetase structure bound to AMP-PNP in the presence of MgCl2. To Be Published

Release Date

2024-01-24

Peptides

Acyl-acyl carrier protein synthetase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
B

D
C

Acyl-acyl carrier protein synthetase

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