SMTL ID : 8i82.1

Crystal structure of Cph001-D189N in complex with CMN IIA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x KBE- DPP- UAL- MYN- DPP- SER: KBE-DPP-UAL-MYN-DPP-SER(Non-covalent)

KBE-DPP-UAL-MYN-DPP-SER.1: 15 residues within 4Å: Chain B: G.188, N.189, G.191, E.193, N.194, D.211, E.214, A.226, A.229, F.261, A.262, Q.264, Q.265, E.277, D.280 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:A.229 Hydrogen bonds: B:N.189, B:N.189, B:N.189, B:G.191, B:E.193, B:N.194, B:N.194, B:D.211, B:E.214, B:Q.265, B:Q.265, B:E.277 Water bridges: B:A.192, B:E.222, B:Q.265, B:Q.265, B:S.268, B:S.268, B:S.268, B:E.277 Salt bridges: B:E.193

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 1 residues within 4Å: Chain A: Q.264 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.264 Water bridges: A:E.222 ACT.3: 2 residues within 4Å: Chain A: R.26, I.210 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.210 Salt bridges: A:R.26 ACT.4: 2 residues within 4Å: Chain B: R.13, L.14 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.14 Salt bridges: B:R.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toh, S.I. et al., Discovery and characterization of genes conferring natural resistance to the antituberculosis antibiotic capreomycin. Commun Biol (2023)

Release Date

2024-01-10

Peptides

Viomycin kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Viomycin kinase

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