SMTL ID : 8i84.1

Crystal structure of Cph001-D189N in complex with CMN IIB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x KBE- DPP- UAL- MYN- DPP- ALA: KBE-DPP-UAL-MYN-DPP-ALA(Non-covalent)

KBE-DPP-UAL-MYN-DPP-ALA.1: 17 residues within 4Å: Chain B: G.188, N.189, G.191, E.193, E.214, A.226, A.229, F.261, A.262, Q.264, Q.265, S.268, A.269, D.272, D.274, E.277, D.280 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:N.189, B:N.189, B:N.189, B:E.193, B:E.214, B:F.261, B:Q.265, B:S.268, B:E.277 Water bridges: B:Q.265, B:Q.265, B:S.268, B:E.277 Salt bridges: B:E.193

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: W.145, F.148, E.222, Q.264 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.145 ACT.4: 2 residues within 4Å: Chain A: C.77, F.89 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.89

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: G.232, K.233, D.234, R.258 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.233, A:D.234, A:D.234, A:R.258, A:R.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toh, S.I. et al., Discovery and characterization of genes conferring natural resistance to the antituberculosis antibiotic capreomycin. Commun Biol (2023)

Release Date

2024-01-10

Peptides

Viomycin kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Viomycin kinase

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