SMTL ID : 8i8h.1

Crystal structure of Cph001-D189N in complex with VIO and ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

1 x KBE- DPP- SER- SER- UAL- 5OH: KBE-DPP-SER-SER-UAL-5OH(Non-covalent)

KBE-DPP-SER-SER-UAL-5OH.1: 16 residues within 4Å: Chain B: R.144, W.145, G.188, N.189, G.191, E.193, E.214, E.222, A.226, A.229, F.261, A.262, Q.264, Q.265, E.277, D.280 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:W.145, B:E.214, B:A.229 Hydrogen bonds: B:R.144, B:N.189, B:N.189, B:N.189, B:N.189, B:G.191, B:E.214, B:E.222, B:Q.264, B:Q.265, B:Q.265 Water bridges: B:E.222, B:A.262, B:Q.265, B:Q.265, B:E.277 Salt bridges: B:E.193

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: R.144, F.148, E.214, Q.264, S.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.264, A:S.268

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 15 residues within 4Å: Chain B: R.26, G.28, Q.29, F.30, H.31, V.33, I.35, P.73, S.93, R.94, V.95, I.210, D.211, D.213, E.214 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:Q.29, B:F.30, B:H.31, B:S.93, B:V.95, B:D.211, B:D.213, B:D.213, B:E.214 Salt bridges: B:H.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toh, S.I. et al., Discovery and characterization of genes conferring natural resistance to the antituberculosis antibiotic capreomycin. Commun Biol (2023)

Release Date

2024-01-10

Peptides

Viomycin kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Viomycin kinase

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