SMTL ID : 8ias.1

Crystal structure of Streptococcus pneumoniae pyruvate kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 9 residues within 4Å: Chain A: K.403, V.510, R.511, N.513 Chain B: R.516, I.517, R.518, T.519, R.521 16 PLIP interactions: 8 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:V.510 Hydrogen bonds: A:K.403, A:R.511, A:R.511, A:N.513, B:T.519 Salt bridges: A:K.403, A:K.403, A:R.511, B:R.516, B:R.518, B:R.518, B:R.521 Water bridges: B:R.516, B:R.516, B:T.519 CIT.2: 9 residues within 4Å: Chain C: K.403, V.510, R.511, N.513 Chain D: R.516, I.517, R.518, T.519, R.521 17 PLIP interactions: 10 interactions with chain D, 7 interactions with chain C Hydrogen bonds: D:T.519, D:T.519, D:T.519, C:R.511, C:R.511, C:N.513 Water bridges: D:R.516, D:R.516, D:R.518 Salt bridges: D:R.516, D:R.518, D:R.518, D:R.521, C:K.403, C:K.403, C:R.511 Hydrophobic interactions: C:V.510

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain D: T.427, K.428, T.429, H.431, T.432, V.510, R.511, T.512 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:T.427, D:K.428, D:K.428, D:K.428, D:H.431, D:T.432, D:T.432, D:V.510, D:T.512, D:T.512

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taguchi, A. et al., Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. (2023)

Release Date

2023-06-14

Peptides

Pyruvate kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyruvate kinase

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