SMTL ID : 8iav.1

Crystal structure of Streptococcus pneumoniae pyruvate kinase in complex with fructose 1,6-bisphosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-tetramer

Ligands

4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FBP.1: 11 residues within 4Å: Chain A: S.402, K.403, T.404, T.427, K.428, T.429, G.430, H.431, T.432, V.510, R.511 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.402, A:K.403, A:T.404, A:T.404, A:T.404, A:T.427, A:T.427, A:K.428, A:T.429, A:G.430, A:H.431, A:T.432, A:V.510 Salt bridges: A:H.431, A:R.511 FBP.2: 10 residues within 4Å: Chain B: S.402, T.404, T.427, K.428, T.429, G.430, H.431, T.432, V.510, R.511 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:S.402, B:T.404, B:T.404, B:T.427, B:T.427, B:T.427, B:K.428, B:T.429, B:G.430, B:H.431, B:T.432, B:T.432, B:V.510 Salt bridges: B:H.431, B:R.511 FBP.3: 12 residues within 4Å: Chain C: S.402, T.404, L.426, T.427, K.428, T.429, G.430, H.431, T.432, V.510, R.511, T.512 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:S.402, C:K.403, C:T.404, C:T.404, C:L.426, C:T.427, C:T.427, C:K.428, C:T.429, C:G.430, C:T.432, C:T.432, C:V.510, C:T.512 Salt bridges: C:H.431, C:R.511 FBP.4: 11 residues within 4Å: Chain D: S.402, K.403, T.404, T.427, K.428, T.429, G.430, H.431, T.432, V.510, R.511 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:S.402, D:T.404, D:T.404, D:T.427, D:T.427, D:K.428, D:T.429, D:G.430, D:H.431, D:T.432, D:V.510 Water bridges: D:K.403 Salt bridges: D:H.431, D:R.511

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taguchi, A. et al., Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. (2023)

Release Date

2023-06-14

Peptides

Pyruvate kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyruvate kinase

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