- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain B: E.270, D.294
- Ligands: OXL.4
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.270, B:D.294, H2O.3, H2O.4
MG.8: 3 residues within 4Å:- Chain C: E.270, D.294
- Ligands: OXL.9
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.270, C:D.294, H2O.7, H2O.8
MG.13: 4 residues within 4Å:- Chain D: K.268, E.270, D.294
- Ligands: OXL.14
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.270, D:D.294, H2O.12
- 3 x OXL: OXALATE ION(Non-covalent)
OXL.4: 8 residues within 4Å:- Chain B: K.268, E.270, A.291, R.292, G.293, D.294, T.326
- Ligands: MG.3
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:G.293, B:D.294, B:T.326, B:T.326, B:T.326
- Water bridges: B:R.74, B:K.268
- Salt bridges: B:R.74, B:K.268, B:K.268
OXL.9: 8 residues within 4Å:- Chain C: K.268, E.270, A.291, R.292, G.293, D.294, T.326
- Ligands: MG.8
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:E.270, C:E.270, C:E.270, C:G.293, C:D.294
- Water bridges: C:K.268
- Salt bridges: C:R.74, C:K.268
OXL.14: 9 residues within 4Å:- Chain D: K.268, E.270, A.291, R.292, G.293, D.294, T.326, M.358
- Ligands: MG.13
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:G.293, D:D.294, D:T.326, D:T.326
- Salt bridges: D:R.74, D:K.268, D:K.268
- 3 x K: POTASSIUM ION(Non-covalent)
K.5: 7 residues within 4Å:- Chain B: N.76, S.78, D.108, T.109, K.110, S.240, K.268
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:S.78, B:D.108, B:T.109
K.10: 6 residues within 4Å:- Chain C: N.76, S.78, D.108, T.109, K.110, S.240
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:S.78, C:D.108, C:T.109, H2O.7
K.15: 6 residues within 4Å:- Chain D: N.76, S.78, D.108, T.109, S.240, K.268
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:S.78, D:T.109
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Taguchi, A. et al., Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. (2023)
- Release Date
- 2023-06-14
- Peptides
- Pyruvate kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x OXL: OXALATE ION(Non-covalent)
- 3 x K: POTASSIUM ION(Non-covalent)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Taguchi, A. et al., Functional and structural characterization of Streptococcus pneumoniae pyruvate kinase involved in fosfomycin resistance. J.Biol.Chem. (2023)
- Release Date
- 2023-06-14
- Peptides
- Pyruvate kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H