- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-3-2-2-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE
- 5 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE.3: 12 residues within 4Å:- Chain C: W.30, Y.103, Y.104, M.316, Y.325, W.326
- Chain G: V.38, R.41, T.42, R.45, V.49
- Ligands: CDL.6
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain G- Hydrophobic interactions: C:W.30, C:Y.103, C:W.326, G:V.38
- Hydrogen bonds: C:Y.104, C:Y.325, C:Y.325
- Salt bridges: G:R.45
3PE.9: 9 residues within 4Å:- Chain C: I.320, I.323, I.327
- Chain F: G.16, F.17, W.20
- Chain G: L.47, P.51, P.52
5 PLIP interactions:3 interactions with chain G, 2 interactions with chain C- Hydrophobic interactions: G:L.47, G:L.47, G:P.52, C:I.320, C:I.327
3PE.11: 8 residues within 4Å:- Chain L: S.473, F.476, L.478
- Chain N: H.221, T.225, I.229
- Chain O: K.310
- Ligands: CDL.10
7 PLIP interactions:5 interactions with chain N, 1 interactions with chain O, 1 interactions with chain L- Hydrophobic interactions: N:T.225, N:I.229, L:L.478
- Salt bridges: N:H.221, N:H.221, N:H.221, O:K.310
3PE.14: 18 residues within 4Å:- Chain N: W.30, F.95, L.96, V.98, G.99, R.100, L.102, Y.103, Y.104, M.316, Q.322, Y.325, W.326, L.332
- Chain Q: H.73
- Chain R: R.45, V.49
- Ligands: CDL.17
10 PLIP interactions:9 interactions with chain N, 1 interactions with chain R- Hydrophobic interactions: N:L.96, N:V.98, N:L.102, N:Y.103, N:Y.103, N:Y.104, N:W.326, N:L.332
- Hydrogen bonds: N:Y.104
- Salt bridges: R:R.45
3PE.21: 12 residues within 4Å:- Chain N: I.320, I.323, I.327
- Chain Q: W.20, A.24
- Chain R: R.43, E.44, L.47, R.48, P.51, P.52, V.55
10 PLIP interactions:6 interactions with chain R, 4 interactions with chain N- Hydrophobic interactions: R:R.43, R:L.47, R:P.51, R:P.52, R:V.55, N:I.323, N:I.323, N:I.327, N:I.327
- Salt bridges: R:R.48
- 2 x U10: UBIQUINONE-10
U10.4: 10 residues within 4Å:- Chain C: F.121, M.124, A.125, F.128, I.146, P.270, F.274, A.277, Y.278, L.294
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:F.121, C:A.125, C:F.128, C:F.128, C:L.294
- pi-Stacking: C:F.274
U10.15: 13 residues within 4Å:- Chain N: L.118, M.124, A.125, F.128, M.129, I.146, I.164, F.178, F.181, L.185, F.274, A.277, L.294
12 PLIP interactions:12 interactions with chain N- Hydrophobic interactions: N:L.118, N:A.125, N:F.128, N:F.128, N:I.164, N:F.178, N:F.178, N:F.181, N:L.185, N:L.185, N:L.294
- pi-Stacking: N:F.274
- 2 x UQ6: 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL
UQ6.5: 18 residues within 4Å:- Chain C: S.17, F.18, L.21, A.23, I.27, S.35, G.38, L.41, M.42, I.45, A.190, A.193, L.197, H.201, S.205, F.220, D.228
- Ligands: HEM.2
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:F.18, C:L.41, C:I.45, C:A.190, C:A.193, C:L.197
- Hydrogen bonds: C:H.201, C:H.201, C:S.205
UQ6.16: 15 residues within 4Å:- Chain N: S.17, F.18, L.21, A.23, W.31, S.35, G.38, M.42, A.190, A.193, L.197, S.205, F.220, D.228
- Ligands: HEM.13
8 PLIP interactions:8 interactions with chain N- Hydrophobic interactions: N:F.18, N:A.190, N:A.193, N:L.197, N:L.197
- Hydrogen bonds: N:S.205, N:D.228
- pi-Stacking: N:F.220
- 4 x CDL: CARDIOLIPIN
CDL.6: 15 residues within 4Å:- Chain C: S.28, S.29, W.30, N.32, F.33, L.36, I.92, I.234, I.238
- Chain D: P.301, Y.304, K.307
- Chain F: H.73
- Chain G: R.41
- Ligands: 3PE.3
11 PLIP interactions:1 interactions with chain F, 1 interactions with chain G, 6 interactions with chain C, 3 interactions with chain D- Salt bridges: F:H.73, G:R.41, D:K.307
- Hydrophobic interactions: C:F.33, C:F.33, C:I.92, C:I.234, D:P.301, D:Y.304
- Hydrogen bonds: C:S.29, C:S.29
CDL.10: 9 residues within 4Å:- Chain L: F.370, F.476, W.477, L.478, R.479
- Chain N: I.19, H.221, T.225
- Ligands: 3PE.11
8 PLIP interactions:5 interactions with chain L, 3 interactions with chain N- Hydrophobic interactions: L:L.478, L:R.479, N:T.225
- Hydrogen bonds: L:L.478, L:R.479
- Salt bridges: L:R.479, N:H.221, N:H.221
CDL.17: 11 residues within 4Å:- Chain N: S.28, S.29, W.30, F.33
- Chain Q: H.73
- Chain R: V.38, R.41, T.42, R.45
- Ligands: 3PE.14, CDL.20
8 PLIP interactions:1 interactions with chain Q, 4 interactions with chain N, 3 interactions with chain R- Salt bridges: Q:H.73, R:R.41, R:R.41, R:R.41
- Hydrophobic interactions: N:W.30, N:F.33
- Hydrogen bonds: N:S.29, N:W.30
CDL.20: 24 residues within 4Å:- Chain N: S.29, N.32, F.33, L.36, I.92, L.96, K.227, G.231, I.234, M.235, I.238
- Chain O: Y.304, K.307, R.308
- Chain Q: R.72, H.73
- Chain R: Y.30, F.31, G.34, I.35, N.37, V.38, R.41
- Ligands: CDL.17
14 PLIP interactions:6 interactions with chain N, 4 interactions with chain O, 1 interactions with chain Q, 3 interactions with chain R- Hydrophobic interactions: N:F.33, N:F.33, N:I.92, N:L.96, N:I.234, N:M.235, O:Y.304, R:I.35
- Hydrogen bonds: O:Y.304, O:R.308, Q:R.72, R:N.37
- Salt bridges: O:K.307, R:R.41
- 2 x HEC: HEME C
HEC.7: 20 residues within 4Å:- Chain D: V.116, V.120, C.121, C.124, H.125, N.189, A.192, L.193, P.194, P.195, R.204, L.215, F.237, A.241, I.242, G.243, M.244, P.247, V.270, L.274
18 PLIP interactions:18 interactions with chain D,- Hydrophobic interactions: D:V.116, D:V.120, D:N.189, D:A.192, D:P.194, D:P.195, D:L.215, D:I.242, D:I.242, D:M.244, D:P.247, D:V.270, D:V.270, D:L.274
- Hydrogen bonds: D:R.204, D:G.243
- pi-Cation interactions: D:H.125
- Metal complexes: D:H.125
HEC.18: 22 residues within 4Å:- Chain O: V.116, V.120, C.121, C.124, H.125, N.189, A.192, P.194, P.195, L.197, I.200, R.204, Y.210, L.214, L.215, F.237, I.242, G.243, M.244, P.247, I.248, V.270
22 PLIP interactions:22 interactions with chain O,- Hydrophobic interactions: O:V.116, O:V.120, O:N.189, O:P.195, O:L.197, O:L.197, O:I.200, O:I.200, O:L.214, O:L.215, O:F.237, O:I.242, O:I.242, O:M.244, O:P.247, O:I.248, O:V.270
- Hydrogen bonds: O:Y.210, O:G.243
- Salt bridges: O:R.204
- pi-Stacking: O:H.125
- Metal complexes: O:H.125
- 2 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
3PH.8: 16 residues within 4Å:- Chain C: V.43, Y.75, M.82, F.236, M.240
- Chain D: H.284, M.288, K.291, M.292, M.295, M.296
- Chain E: Y.127, A.128, N.131, V.132, Q.135
11 PLIP interactions:3 interactions with chain E, 4 interactions with chain D, 4 interactions with chain C- Hydrophobic interactions: E:A.128, E:V.132, D:M.292, D:M.295, C:V.43, C:F.236, C:F.236, C:F.236
- Hydrogen bonds: E:N.131
- Salt bridges: D:H.284, D:K.291
3PH.19: 16 residues within 4Å:- Chain N: V.43, M.82, L.233, F.236, M.240
- Chain O: M.288, K.291, M.292, M.295, M.296
- Chain P: Y.127, A.128, N.131, V.132, Q.135, F.136
9 PLIP interactions:2 interactions with chain O, 3 interactions with chain N, 4 interactions with chain P- Hydrophobic interactions: O:M.295, N:V.43, N:L.233, N:F.236, P:V.132, P:V.132, P:F.136
- Salt bridges: O:K.291
- Hydrogen bonds: P:N.131
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, Y.C. et al., Structural basis of respiratory complex adaptation to cold temperatures. Cell (2024)
- Release Date
- 2024-09-18
- Peptides
- Cytochrome b-c1 complex subunit 1, mitochondrial: AL
Cytochrome b-c1 complex subunit 2, mitochondrial: BM
Cytochrome b: CN
Cytochrome c1, heme protein, mitochondrial: DO
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EIP
Cytochrome b-c1 complex subunit 7: FQ
Cytochrome b-c1 complex subunit 8: GR
Cytochrome b-c1 complex subunit 6, mitochondrial: HS
Cytochrome b-c1 complex subunit 9: JT
Cytochrome b-c1 complex subunit 10: KU - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAL
AaB
ABM
AbC
ACN
AcD
ADO
AdE
AEI
AIP
AeF
AFQ
AfG
AGR
AgH
AHS
AhJ
AJT
AjK
AKU
Ak - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8ib7.1
Respiratory complex CIII2, focus-refined of type IA, Wild type mouse under cold temperature
Cytochrome b-c1 complex subunit 1, mitochondrial
Cytochrome b-c1 complex subunit 2, mitochondrial
Toggle Identical (BM)Cytochrome b
Toggle Identical (CN)Cytochrome c1, heme protein, mitochondrial
Cytochrome b-c1 complex subunit Rieske, mitochondrial
Cytochrome b-c1 complex subunit 7
Toggle Identical (FQ)Cytochrome b-c1 complex subunit 8
Toggle Identical (GR)Cytochrome b-c1 complex subunit 6, mitochondrial
Cytochrome b-c1 complex subunit 9
Cytochrome b-c1 complex subunit 10
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7o37.1 | 7o3c.1 | 7o3e.1 | 7o3h.1 | 8iar.1 | 8ibc.1 | 8ibg.1 | 8ic5.1 | 8pw5.4 | 8pw5.5 | 8pw5.6 | 8pw5.7 | 8pw5.8 | 8pw5.9 | 8pw5.10 | 8pw5.11 | 8pw5.12 | 8pw5.13 | 8pw5.14 | 8pw5.15 | 8pw5.16 | 8pw5.17 | 8pw5.18 | 8pw5.19 | 8pw5.20 | 8pw5.21 | 8pw5.22 | 8pw5.23 | 8pw5.24 | 8pw6.1 more...less...8pw6.2 | 8pw6.3 | 8pw6.4 | 8pw6.5 | 8pw6.6 | 8pw6.7 | 8pw6.8 | 8pw6.9 | 8pw6.10 | 8pw6.11 | 8pw6.12 | 8pw6.13 | 8pw6.14 | 8pw6.15 | 8pw6.16 | 8pw6.17 | 8pw6.18 | 8pw6.19 | 8pw6.20 | 8pw6.21 | 8pw7.13 | 8pw7.14 | 8pw7.15 | 8pw7.16 | 8pw7.17 | 8pw7.18 | 8pw7.19 | 8pw7.20 | 8pw7.21 | 8pw7.22 | 8pw7.23 | 8pw7.24 | 8pw7.25 | 8pw7.26 | 8pw7.27 | 8pw7.28 | 8pw7.29 | 8pw7.30 | 8pw7.31 | 8pw7.32 | 8pw7.33