- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-4-2-2-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE
- 2 x UQ6: 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL
UQ6.3: 14 residues within 4Å:- Chain C: S.17, F.18, L.21, W.31, S.35, G.38, L.41, A.190, I.194, L.197, S.205, F.220, D.228
- Ligands: HEM.2
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:F.18, C:F.18, C:L.41, C:A.190, C:I.194, C:L.197
- Hydrogen bonds: C:S.17
UQ6.10: 16 residues within 4Å:- Chain N: S.17, F.18, L.21, A.23, W.31, S.35, G.38, L.41, M.42, A.190, A.193, L.197, S.205, F.220, D.228
- Ligands: HEM.7
8 PLIP interactions:8 interactions with chain N- Hydrophobic interactions: N:F.18, N:L.41, N:A.190, N:A.193, N:L.197, N:L.197
- Hydrogen bonds: N:S.17, N:S.205
- 2 x HEC: HEME C
HEC.4: 21 residues within 4Å:- Chain D: V.120, C.121, C.124, H.125, N.189, A.192, L.193, P.194, P.195, I.200, R.204, Y.210, V.211, L.214, L.215, F.237, I.242, G.243, M.244, A.245, P.247
19 PLIP interactions:19 interactions with chain D,- Hydrophobic interactions: D:V.120, D:N.189, D:A.192, D:P.195, D:I.200, D:V.211, D:L.214, D:L.215, D:F.237, D:M.244, D:A.245, D:P.247
- Hydrogen bonds: D:L.193, D:L.193, D:Y.210, D:Y.210
- Salt bridges: D:R.204
- pi-Stacking: D:H.125
- Metal complexes: D:H.125
HEC.11: 19 residues within 4Å:- Chain O: V.120, C.121, C.124, H.125, N.189, A.192, L.193, P.194, P.195, I.200, R.204, Y.210, L.215, F.237, G.243, M.244, I.248, V.270, L.274
16 PLIP interactions:16 interactions with chain O,- Hydrophobic interactions: O:V.120, O:N.189, O:A.192, O:P.194, O:P.195, O:I.200, O:L.215, O:F.237, O:I.248, O:V.270, O:L.274
- Hydrogen bonds: O:L.193, O:Y.210, O:G.243
- Salt bridges: O:R.204
- Metal complexes: O:H.125
- 3 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE.5: 7 residues within 4Å:- Chain L: S.473, F.476
- Chain N: H.221, T.225, I.229
- Chain O: K.310
- Chain P: Y.115
5 PLIP interactions:1 interactions with chain L, 4 interactions with chain N- Hydrogen bonds: L:S.473
- Hydrophobic interactions: N:T.225, N:I.229
- Salt bridges: N:H.221, N:H.221
3PE.8: 16 residues within 4Å:- Chain N: W.30, F.95, L.96, V.98, G.99, R.100, L.102, Y.103, Y.104, L.301, M.316, Y.325, W.326
- Chain Q: H.73
- Chain R: R.45
- Ligands: CDL.13
11 PLIP interactions:1 interactions with chain Q, 9 interactions with chain N, 1 interactions with chain R- Hydrogen bonds: Q:H.73
- Hydrophobic interactions: N:W.30, N:W.30, N:L.96, N:V.98, N:L.102, N:Y.103, N:Y.103, N:L.301, N:W.326
- Salt bridges: R:R.45
3PE.15: 13 residues within 4Å:- Chain N: P.319, I.320, I.323
- Chain Q: F.17, W.20, Y.21
- Chain R: R.43, E.44, I.46, L.47, R.48, P.51, P.52
7 PLIP interactions:5 interactions with chain R, 2 interactions with chain N- Hydrophobic interactions: R:R.43, R:I.46, R:L.47, R:P.51, N:I.323, N:I.323
- Salt bridges: R:R.48
- 1 x U10: UBIQUINONE-10
- 1 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
3PH.12: 17 residues within 4Å:- Chain N: V.43, M.82, F.236, M.240
- Chain O: R.287, M.288, K.291, M.292, M.295, M.296, L.299
- Chain P: A.128, A.129, N.131, V.132, Q.135
- Chain U: D.37
11 PLIP interactions:4 interactions with chain O, 3 interactions with chain P, 4 interactions with chain N- Hydrophobic interactions: O:M.292, O:M.295, O:L.299, P:A.128, P:V.132, N:V.43, N:F.236, N:F.236, N:F.236
- Salt bridges: O:K.291
- Hydrogen bonds: P:N.131
- 2 x CDL: CARDIOLIPIN
CDL.13: 11 residues within 4Å:- Chain N: S.28, S.29, W.30, F.33
- Chain Q: H.73
- Chain R: V.38, R.41, T.42, R.45
- Ligands: 3PE.8, CDL.14
9 PLIP interactions:1 interactions with chain Q, 4 interactions with chain R, 4 interactions with chain N- Salt bridges: Q:H.73, R:R.41, R:R.41, R:R.41
- Hydrophobic interactions: R:V.38, N:W.30, N:F.33
- Hydrogen bonds: N:S.29, N:S.29
CDL.14: 26 residues within 4Å:- Chain N: S.29, N.32, F.33, L.36, I.92, L.96, K.227, L.230, G.231, I.234, M.235, I.238
- Chain O: Y.304, K.307, R.308, K.315
- Chain Q: R.72, H.73
- Chain R: Y.30, F.31, G.34, I.35, N.37, V.38, R.41
- Ligands: CDL.13
18 PLIP interactions:8 interactions with chain N, 3 interactions with chain O, 6 interactions with chain R, 1 interactions with chain Q- Hydrophobic interactions: N:N.32, N:F.33, N:F.33, N:I.92, N:L.96, N:I.234, N:I.234, N:M.235, R:Y.30, R:F.31, R:I.35, R:V.38
- Hydrogen bonds: O:Y.304, O:R.308, R:N.37, Q:R.72
- Salt bridges: O:K.307, R:R.41
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, Y.C. et al., Structural basis of respiratory complex adaptation to cold temperatures. Cell (2024)
- Release Date
- 2024-09-18
- Peptides
- Cytochrome b-c1 complex subunit 1, mitochondrial: AL
Cytochrome b-c1 complex subunit 2, mitochondrial: BM
Cytochrome b: CN
Cytochrome c1, heme protein, mitochondrial: DO
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EIPT
Cytochrome b-c1 complex subunit 7: FQ
Cytochrome b-c1 complex subunit 8: GR
Cytochrome b-c1 complex subunit 6, mitochondrial: HS
Cytochrome b-c1 complex subunit 9: JU
Cytochrome b-c1 complex subunit 10: KV - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAL
AaB
ABM
AbC
ACN
AcD
ADO
AdE
AEI
AIP
AeT
AiF
AFQ
AfG
AGR
AgH
AHS
AhJ
AJU
AjK
AKV
Ak - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8ibg.1
Respiratory complex CIII2, focus-refined of type II, Wild type mouse under cold temperature
Cytochrome b-c1 complex subunit 1, mitochondrial
Cytochrome b-c1 complex subunit 2, mitochondrial
Toggle Identical (BM)Cytochrome b
Toggle Identical (CN)Cytochrome c1, heme protein, mitochondrial
Cytochrome b-c1 complex subunit Rieske, mitochondrial
Cytochrome b-c1 complex subunit 7
Cytochrome b-c1 complex subunit 8
Cytochrome b-c1 complex subunit 6, mitochondrial
Cytochrome b-c1 complex subunit 9
Cytochrome b-c1 complex subunit 10
Related Entries With Identical Sequence
7o37.1 | 7o3c.1 | 7o3e.1 | 7o3h.1 | 8iar.1 | 8ib7.1 | 8ibc.1 | 8ic5.1 | 8pw5.4 | 8pw5.5 | 8pw5.6 | 8pw5.7 | 8pw5.8 | 8pw5.9 | 8pw5.10 | 8pw5.11 | 8pw5.12 | 8pw5.13 | 8pw5.14 | 8pw5.15 | 8pw5.16 | 8pw5.17 | 8pw5.18 | 8pw5.19 | 8pw5.20 | 8pw5.21 | 8pw5.22 | 8pw5.23 | 8pw5.24 | 8pw6.1 more...less...8pw6.2 | 8pw6.3 | 8pw6.4 | 8pw6.5 | 8pw6.6 | 8pw6.7 | 8pw6.8 | 8pw6.9 | 8pw6.10 | 8pw6.11 | 8pw6.12 | 8pw6.13 | 8pw6.14 | 8pw6.15 | 8pw6.16 | 8pw6.17 | 8pw6.18 | 8pw6.19 | 8pw6.20 | 8pw6.21 | 8pw7.13 | 8pw7.14 | 8pw7.15 | 8pw7.16 | 8pw7.17 | 8pw7.18 | 8pw7.19 | 8pw7.20 | 8pw7.21 | 8pw7.22 | 8pw7.23 | 8pw7.24 | 8pw7.25 | 8pw7.26 | 8pw7.27 | 8pw7.28 | 8pw7.29 | 8pw7.30 | 8pw7.31 | 8pw7.32 | 8pw7.33