- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-3-2-2-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE
- 2 x UQ6: 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL
UQ6.3: 11 residues within 4Å:- Chain C: S.17, F.18, L.21, S.35, G.38, L.41, M.42, A.193, L.197, S.205
- Ligands: HEM.2
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:F.18, C:F.18, C:L.41, C:M.42, C:A.193, C:L.197
- Hydrogen bonds: C:S.17, C:S.205
UQ6.11: 11 residues within 4Å:- Chain N: S.17, F.18, L.21, A.23, S.35, G.38, M.42, L.197, S.205, F.220
- Ligands: HEM.8
3 PLIP interactions:3 interactions with chain N- Hydrophobic interactions: N:F.18, N:L.197
- Hydrogen bonds: N:S.17
- 2 x HEC: HEME C
HEC.4: 23 residues within 4Å:- Chain D: V.120, C.121, C.124, H.125, N.189, A.192, L.193, P.194, P.195, I.200, R.204, Y.210, L.214, L.215, F.237, P.238, I.242, G.243, M.244, P.247, I.248, V.270, L.274
21 PLIP interactions:21 interactions with chain D,- Hydrophobic interactions: D:V.120, D:N.189, D:P.194, D:P.195, D:I.200, D:Y.210, D:L.214, D:L.215, D:L.215, D:F.237, D:I.242, D:M.244, D:P.247, D:I.248, D:V.270, D:L.274
- Hydrogen bonds: D:Y.210, D:Y.210, D:G.243
- Salt bridges: D:R.204
- Metal complexes: D:H.125
HEC.12: 23 residues within 4Å:- Chain O: V.120, C.121, C.124, H.125, N.189, A.192, L.193, P.194, P.195, I.200, R.204, Y.210, L.214, L.215, F.237, P.238, I.242, G.243, M.244, P.247, I.248, V.270, L.274
20 PLIP interactions:20 interactions with chain O,- Hydrophobic interactions: O:V.120, O:N.189, O:P.194, O:P.195, O:I.200, O:Y.210, O:L.214, O:L.215, O:L.215, O:F.237, O:I.242, O:M.244, O:P.247, O:I.248, O:V.270, O:L.274
- Hydrogen bonds: O:Y.210, O:G.243
- Salt bridges: O:R.204
- Metal complexes: O:H.125
- 3 x CDL: CARDIOLIPIN
CDL.5: 7 residues within 4Å:- Chain L: F.370, W.477, L.478, R.479
- Chain N: I.19, H.221
- Ligands: 3PE.6
7 PLIP interactions:5 interactions with chain L, 2 interactions with chain N- Hydrophobic interactions: L:L.478, N:I.19
- Hydrogen bonds: L:L.478, L:R.479
- Salt bridges: L:R.479, L:R.479, N:H.221
CDL.13: 10 residues within 4Å:- Chain N: S.28, S.29, W.30
- Chain Q: H.73
- Chain R: V.38, R.41, T.42, R.45
- Ligands: 3PE.9, CDL.14
9 PLIP interactions:4 interactions with chain R, 4 interactions with chain N, 1 interactions with chain Q- Hydrophobic interactions: R:V.38, N:W.30
- Salt bridges: R:R.41, R:R.41, R:R.41, Q:H.73
- Hydrogen bonds: N:S.29, N:S.29, N:W.30
CDL.14: 19 residues within 4Å:- Chain N: S.29, N.32, F.33, I.92, G.231, I.234, I.238
- Chain O: Y.304, K.307, R.308, K.315
- Chain R: Y.30, F.31, G.34, I.35, N.37, V.38, R.41
- Ligands: CDL.13
13 PLIP interactions:5 interactions with chain N, 3 interactions with chain O, 5 interactions with chain R- Hydrophobic interactions: N:F.33, N:F.33, N:I.92, N:I.234, N:I.238, R:Y.30, R:F.31, R:I.35
- Hydrogen bonds: O:Y.304, O:R.308, R:N.37, R:R.41
- Salt bridges: O:K.307
- 3 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE.6: 7 residues within 4Å:- Chain L: S.473, F.476, L.478
- Chain N: H.221, I.229
- Chain O: K.310
- Ligands: CDL.5
6 PLIP interactions:3 interactions with chain N, 2 interactions with chain L, 1 interactions with chain O- Hydrophobic interactions: N:I.229
- Salt bridges: N:H.221, N:H.221, O:K.310
- Hydrogen bonds: L:S.473, L:F.476
3PE.9: 17 residues within 4Å:- Chain N: W.30, F.95, L.96, V.98, G.99, R.100, L.102, Y.103, Y.104, M.316, Y.325, W.326, L.332
- Chain Q: H.73
- Chain R: R.45, V.49
- Ligands: CDL.13
9 PLIP interactions:8 interactions with chain N, 1 interactions with chain R- Hydrophobic interactions: N:W.30, N:W.30, N:V.98, N:L.102, N:Y.103, N:Y.104, N:W.326, N:L.332
- Salt bridges: R:R.45
3PE.15: 14 residues within 4Å:- Chain N: I.320, I.323, I.327, I.334, L.353, A.354
- Chain Q: F.17, W.20
- Chain R: R.43, E.44, L.47, R.48, V.55, I.59
7 PLIP interactions:4 interactions with chain N, 3 interactions with chain R- Hydrophobic interactions: N:I.323, N:I.327, N:I.334, N:L.353, R:V.55, R:I.59
- Salt bridges: R:R.48
- 1 x U10: UBIQUINONE-10
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, Y.C. et al., Structural basis of respiratory complex adaptation to cold temperatures. Cell (2024)
- Release Date
- 2024-09-18
- Peptides
- Cytochrome b-c1 complex subunit 1, mitochondrial: AL
Cytochrome b-c1 complex subunit 2, mitochondrial: BM
Cytochrome b: CN
Cytochrome c1, heme protein, mitochondrial: DO
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EIP
Cytochrome b-c1 complex subunit 7: FQ
Cytochrome b-c1 complex subunit 8: GR
Cytochrome b-c1 complex subunit 6, mitochondrial: HS
Cytochrome b-c1 complex subunit 9: JT
Cytochrome b-c1 complex subunit 10: KU - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAL
AaB
ABM
AbC
ACN
AcD
ADO
AdE
AEI
AIP
AeF
AFQ
AfG
AGR
AgH
AHS
AhJ
AJT
AjK
AKU
Ak - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8ic5.1
Respiratory complex CIII2, focus-refined of type I, PERK -/- mouse under cold temperature
Cytochrome b-c1 complex subunit 1, mitochondrial
Cytochrome b-c1 complex subunit 2, mitochondrial
Cytochrome b
Cytochrome c1, heme protein, mitochondrial
Cytochrome b-c1 complex subunit Rieske, mitochondrial
Cytochrome b-c1 complex subunit 7
Cytochrome b-c1 complex subunit 8
Cytochrome b-c1 complex subunit 6, mitochondrial
Toggle Identical (HS)Cytochrome b-c1 complex subunit 9
Toggle Identical (JT)Cytochrome b-c1 complex subunit 10
Related Entries With Identical Sequence
7o37.1 | 7o3c.1 | 7o3e.1 | 7o3h.1 | 8iar.1 | 8ib7.1 | 8ibc.1 | 8ibg.1 | 8pw5.4 | 8pw5.5 | 8pw5.6 | 8pw5.7 | 8pw5.8 | 8pw5.9 | 8pw5.10 | 8pw5.11 | 8pw5.12 | 8pw5.13 | 8pw5.14 | 8pw5.15 | 8pw5.16 | 8pw5.17 | 8pw5.18 | 8pw5.19 | 8pw5.20 | 8pw5.21 | 8pw5.22 | 8pw5.23 | 8pw5.24 | 8pw6.1 more...less...8pw6.2 | 8pw6.3 | 8pw6.4 | 8pw6.5 | 8pw6.6 | 8pw6.7 | 8pw6.8 | 8pw6.9 | 8pw6.10 | 8pw6.11 | 8pw6.12 | 8pw6.13 | 8pw6.14 | 8pw6.15 | 8pw6.16 | 8pw6.17 | 8pw6.18 | 8pw6.19 | 8pw6.20 | 8pw6.21 | 8pw7.13 | 8pw7.14 | 8pw7.15 | 8pw7.16 | 8pw7.17 | 8pw7.18 | 8pw7.19 | 8pw7.20 | 8pw7.21 | 8pw7.22 | 8pw7.23 | 8pw7.24 | 8pw7.25 | 8pw7.26 | 8pw7.27 | 8pw7.28 | 8pw7.29 | 8pw7.30 | 8pw7.31 | 8pw7.32 | 8pw7.33