SMTL ID : 8ie6.1

Crystal structure of DAPK1 in complex with pinostilbene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 8KZ: 3-[(E)-2-(4-hydroxyphenyl)ethenyl]-5-methoxy-phenol(Non-covalent)

8KZ.1: 14 residues within 4Å: Chain A: L.19, G.20, S.21, G.22, A.25, V.27, A.40, I.77, E.94, L.95, V.96, E.100, E.143, I.160 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.19, A:V.27, A:A.40, A:I.77, A:I.160 Hydrogen bonds: A:V.96, A:V.96, A:E.100, A:E.143

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: F.236, K.249, R.253 4 PLIP interactions: 4 interactions with chain A Water bridges: A:F.236, A:K.249 Salt bridges: A:K.249, A:R.253 SO4.3: 7 residues within 4Å: Chain A: I.177, F.178, V.184, I.188, V.189, Y.191, L.226 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.188 Water bridges: A:I.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Characterization of the molecular interactions between resveratrol derivatives and death-associated protein kinase 1. Febs J. (2023)

Release Date

2023-05-24

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1

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