SMTL ID : 8il7.1

Structure of human soluble Adenylyl Cyclase in complex with lactate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-trimer

Ligands

3 x 2OP: (2S)-2-HYDROXYPROPANOIC ACID(Non-covalent)

2OP.1: 6 residues within 4Å: Chain A: K.95, L.102, L.166, V.167, F.336, M.337 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.166, A:M.337 Hydrogen bonds: A:V.167, A:M.337 Salt bridges: A:K.95 2OP.5: 6 residues within 4Å: Chain B: K.95, L.102, L.166, V.167, F.336, M.337 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.166, B:M.337 Hydrogen bonds: B:V.167, B:M.337 Salt bridges: B:K.95 2OP.9: 6 residues within 4Å: Chain C: K.95, L.102, L.166, V.167, F.336, M.337 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.166, C:M.337 Hydrogen bonds: C:V.167, C:M.337 Salt bridges: C:K.95

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: H.162, H.164, Y.318, T.322, G.330, Q.331, I.332 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.162, A:H.164, A:I.332, A:I.332 GOL.3: 9 residues within 4Å: Chain A: H.164, Y.268, V.269, M.270, Q.331, I.332, N.333 Ligands: GOL.2, GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.164, A:Y.268, A:Q.331, A:N.333 Water bridges: A:M.270 GOL.4: 8 residues within 4Å: Chain A: H.19, L.20, F.165, Y.268, N.333, K.334, E.403 Ligands: GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.19, A:N.333, A:K.334 Water bridges: A:R.401, A:E.403, A:Y.404 GOL.6: 8 residues within 4Å: Chain B: H.162, H.164, Y.318, T.322, G.330, Q.331, I.332 Ligands: GOL.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.162, B:H.164, B:I.332, B:I.332 GOL.7: 9 residues within 4Å: Chain B: H.164, Y.268, V.269, M.270, Q.331, I.332, N.333 Ligands: GOL.6, GOL.8 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.164, B:Y.268, B:Q.331, B:N.333 Water bridges: B:M.270 GOL.8: 8 residues within 4Å: Chain B: H.19, L.20, F.165, Y.268, N.333, K.334, E.403 Ligands: GOL.7 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.19, B:N.333, B:K.334 Water bridges: B:R.401, B:E.403, B:Y.404 GOL.10: 8 residues within 4Å: Chain C: H.162, H.164, Y.318, T.322, G.330, Q.331, I.332 Ligands: GOL.11 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:H.162, C:H.164, C:I.332, C:I.332 GOL.11: 9 residues within 4Å: Chain C: H.164, Y.268, V.269, M.270, Q.331, I.332, N.333 Ligands: GOL.10, GOL.12 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:H.164, C:Y.268, C:Q.331, C:N.333 Water bridges: C:M.270 GOL.12: 8 residues within 4Å: Chain C: H.19, L.20, F.165, Y.268, N.333, K.334, E.403 Ligands: GOL.11 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:H.19, C:N.333, C:K.334 Water bridges: C:R.401, C:E.403, C:Y.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., Lactate modulates iron metabolism by binding soluble adenylyl cyclase. Cell Metab. (2023)

Release Date

2023-07-26

Peptides

Adenylate cyclase type 10: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Adenylate cyclase type 10

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