SMTL ID : 8is7.1

CrtMLIKE with two FsPP molecules.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

4 x FPS: S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE(Non-covalent)

FPS.1: 18 residues within 4Å: Chain A: F.26, Y.41, C.44, R.45, D.48, D.52, M.103, Q.107, Y.125, V.129, V.133, L.137, Q.161, N.164 Ligands: FPS.2, MG.3, MG.4, MG.5 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.26, A:Y.41, A:Y.41, A:D.48, A:V.133, A:L.137 Hydrogen bonds: A:Y.125 Water bridges: A:R.45, A:Q.107, A:Y.125, A:Q.161, A:D.172, A:D.172, A:R.177 FPS.2: 14 residues within 4Å: Chain A: F.22, R.45, A.130, V.133, G.134, A.153, L.156, M.160, Q.161, N.164, R.167, Y.229, Y.244 Ligands: FPS.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.22, A:V.133, A:V.133, A:A.153, A:L.156, A:M.160, A:N.164 Hydrogen bonds: A:R.45, A:R.45, A:D.48, A:R.167 Water bridges: A:Y.244, A:Y.244 FPS.6: 18 residues within 4Å: Chain B: F.26, Y.41, C.44, R.45, D.48, D.52, M.103, Q.107, Y.125, V.129, V.133, L.137, Q.161, N.164 Ligands: FPS.7, MG.8, MG.9, MG.10 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:F.26, B:Y.41, B:Y.41, B:D.48, B:V.133, B:L.137 Water bridges: B:R.45, B:D.52, B:D.52, B:D.52, B:Q.107, B:D.110, B:Y.125, B:Q.161, B:N.164, B:D.168, B:D.168, B:D.172, B:R.177 FPS.7: 14 residues within 4Å: Chain B: F.22, R.45, A.130, V.133, G.134, A.153, L.156, M.160, Q.161, N.164, R.167, Y.229, Y.244 Ligands: FPS.6 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.22, B:V.133, B:V.133, B:A.153, B:L.156, B:M.160, B:N.164 Hydrogen bonds: B:R.45, B:R.45, B:D.48, B:N.164, B:R.167 Water bridges: B:N.164, B:Y.244

6 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: D.48, D.52, D.110 Ligands: FPS.1, MG.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.48, A:D.52, H2O.1, H2O.5, H2O.10 MG.4: 4 residues within 4Å: Chain A: D.48, D.52 Ligands: FPS.1, MG.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.48, A:D.52, H2O.1, H2O.8, H2O.11 MG.5: 3 residues within 4Å: Chain A: N.164, D.168 Ligands: FPS.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.168, H2O.2, H2O.5, H2O.5 MG.8: 5 residues within 4Å: Chain B: D.48, D.52, D.110 Ligands: FPS.6, MG.9 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.48, B:D.52, H2O.20, H2O.25, H2O.30 MG.9: 4 residues within 4Å: Chain B: D.48, D.52 Ligands: FPS.6, MG.8 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.48, B:D.52, H2O.21, H2O.28, H2O.31 MG.10: 3 residues within 4Å: Chain B: N.164, D.168 Ligands: FPS.6 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.168, H2O.22, H2O.25, H2O.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.Y., CrtMLIKE with two FsPP molecules. To Be Published

Release Date

2024-06-26

Peptides

CrtM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CrtM

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