- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-15-15-1-2-1-1-1-1-mer
- Ligands
- 48 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.1: 18 residues within 4Å:- Chain A: T.32, G.36, A.40, H.44, C.47, W.53
- Chain J: G.19, A.23, I.26, H.27, F.36
- Chain L: I.33
- Ligands: U42.3, BCL.20, BCL.26, U4Z.28, U42.29, BCL.31
10 PLIP interactions:3 interactions with chain J, 6 interactions with chain A, 1 interactions with chain L,- Hydrophobic interactions: J:I.26, J:F.36, A:T.32, A:W.53, A:W.53, A:W.53, A:W.53, L:I.33
- Hydrogen bonds: J:H.27
- Metal complexes: A:H.44
BCL.2: 21 residues within 4Å:- Chain A: W.14, L.17, F.18, W.23, H.26, V.30, I.33, Y.34
- Chain I: I.28, K.31, T.32, G.35, I.38
- Chain J: F.6, F.8, S.11, V.12, S.15
- Ligands: U42.3, U4Z.21, BCL.23
14 PLIP interactions:3 interactions with chain I, 3 interactions with chain J, 8 interactions with chain A,- Hydrophobic interactions: I:I.28, I:I.28, I:I.38, J:F.6, J:V.12, A:W.14, A:L.17, A:F.18, A:F.18, A:W.23, A:V.30, A:I.33
- Hydrogen bonds: J:S.11
- Metal complexes: A:H.26
BCL.4: 18 residues within 4Å:- Chain B: V.13, T.16, G.19, A.23, H.27, W.38
- Chain C: I.39, A.40, H.44
- Chain D: F.6, S.11, I.26
- Ligands: U4Z.5, BCL.7, U4Z.10, U42.12, BCL.13, BCL.14
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain D,- Hydrophobic interactions: B:V.13, B:T.16, D:F.6, D:F.6, D:I.26
- pi-Stacking: B:H.27
BCL.7: 19 residues within 4Å:- Chain B: G.19, M.22, A.23, I.26, H.27, F.36
- Chain C: G.36, A.40, H.44, C.47, W.53
- Chain M: I.38, W.41, I.42
- Ligands: BCL.4, U4Z.5, U42.12, BCL.13, BCL.14
9 PLIP interactions:2 interactions with chain B, 5 interactions with chain C, 2 interactions with chain M,- Hydrophobic interactions: B:I.26, B:F.36, C:A.40, C:W.53, C:W.53, C:W.53, M:I.38, M:I.42
- Metal complexes: C:H.44
BCL.8: 13 residues within 4Å:- Chain B: F.8, S.11, S.15
- Chain C: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Chain M: F.20, I.27
- Ligands: U4Z.32
12 PLIP interactions:2 interactions with chain M, 7 interactions with chain C, 3 interactions with chain B,- Hydrophobic interactions: M:F.20, M:I.27, C:W.14, C:L.17, C:F.18, C:W.23, C:V.30, B:F.8, B:F.8
- Hydrogen bonds: C:Y.34, B:S.11
- Metal complexes: C:H.26
BCL.9: 19 residues within 4Å:- Chain D: T.16, G.19, L.20, A.23, H.27, W.38
- Chain E: G.36, I.39, A.40, H.44
- Chain F: F.6, V.14, S.15, I.26
- Ligands: U4Z.10, BCL.13, U42.15, U4Z.17, BCL.18
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain D,- Hydrophobic interactions: F:F.6, F:V.14, F:I.26, D:T.16
- Metal complexes: D:H.27
BCL.13: 20 residues within 4Å:- Chain B: L.39
- Chain D: G.19, A.23, I.26, H.27
- Chain E: I.33, G.36, A.40, H.44, C.47, W.53
- Ligands: BCL.4, BCL.7, BCL.9, U4Z.10, U42.12, U42.15, U4Z.17, BCL.18, BCL.19
8 PLIP interactions:1 interactions with chain B, 5 interactions with chain E, 2 interactions with chain D,- Hydrophobic interactions: B:L.39, E:W.53, E:W.53, E:W.53, E:W.53, D:I.26
- Metal complexes: E:H.44
- Hydrogen bonds: D:H.27
BCL.14: 21 residues within 4Å:- Chain C: I.28, K.31, T.32, G.35, I.39
- Chain D: F.6, E.7, F.8, S.11, V.12, S.15
- Chain E: W.14, L.17, F.18, H.26, V.30, Y.34
- Ligands: BCL.4, U4Z.5, BCL.7, U42.12
17 PLIP interactions:10 interactions with chain E, 4 interactions with chain C, 3 interactions with chain D,- Hydrophobic interactions: E:W.14, E:L.17, E:F.18, E:F.18, E:V.30, C:I.28, C:K.31, C:K.31, D:F.8, D:V.12
- Salt bridges: E:H.26, C:K.31
- pi-Stacking: E:W.14, E:H.26
- pi-Cation interactions: E:H.26
- Metal complexes: E:H.26
- Hydrogen bonds: D:S.11
BCL.16: 16 residues within 4Å:- Chain F: T.16, G.19, L.20, A.23, H.27, W.38
- Chain G: A.40, H.44, C.47
- Chain H: F.6, I.26
- Ligands: U4Z.17, BCL.18, U4Z.21, U42.22, BCL.23
4 PLIP interactions:1 interactions with chain F, 3 interactions with chain H,- Hydrophobic interactions: F:T.16, H:F.6, H:F.6, H:I.26
BCL.18: 16 residues within 4Å:- Chain F: G.19, A.23, I.26, H.27, F.36
- Chain G: A.40, H.44, C.47, W.53
- Ligands: BCL.9, BCL.13, U42.15, BCL.16, U4Z.17, U4Z.21, BCL.23
8 PLIP interactions:5 interactions with chain G, 3 interactions with chain F,- Hydrophobic interactions: G:W.53, G:W.53, G:W.53, G:W.53, F:I.26, F:F.36
- Metal complexes: G:H.44
- Hydrogen bonds: F:H.27
BCL.19: 21 residues within 4Å:- Chain E: I.28, K.31, T.32, G.35, I.39
- Chain F: R.4, F.8, S.11, V.12, S.15
- Chain G: W.14, L.17, F.18, W.23, H.26, V.30, I.33, Y.34
- Ligands: U4Z.10, BCL.13, U42.15
14 PLIP interactions:8 interactions with chain G, 3 interactions with chain F, 3 interactions with chain E,- Hydrophobic interactions: G:W.14, G:L.17, G:F.18, G:W.23, G:V.30, G:I.33, G:Y.34, F:F.8, F:V.12, E:I.28, E:I.39
- Metal complexes: G:H.26
- Hydrogen bonds: F:S.11
- Salt bridges: E:K.31
BCL.20: 17 residues within 4Å:- Chain A: I.54
- Chain H: T.16, A.23, H.27, W.38
- Chain I: G.36, I.39, A.40, A.43, H.44
- Chain J: F.6, I.26
- Ligands: BCL.1, U42.3, U4Z.21, BCL.23, U4Z.25
6 PLIP interactions:2 interactions with chain H, 1 interactions with chain I, 2 interactions with chain J, 1 interactions with chain A,- Hydrophobic interactions: H:T.16, I:A.43, J:F.6, J:I.26, A:I.54
- pi-Stacking: H:H.27
BCL.23: 19 residues within 4Å:- Chain H: G.19, A.23, I.26, H.27
- Chain I: T.32, G.36, L.37, A.40, H.44, C.47, W.53
- Ligands: BCL.2, U42.3, BCL.16, BCL.18, BCL.20, U4Z.21, U42.22, U4Z.25
7 PLIP interactions:6 interactions with chain I, 1 interactions with chain H,- Hydrophobic interactions: I:T.32, I:W.53, I:W.53, I:W.53, I:W.53, H:I.26
- Metal complexes: I:H.44
BCL.24: 18 residues within 4Å:- Chain G: I.28, K.31, T.32, G.35, I.38, I.39
- Chain H: F.8, S.11, V.12
- Chain I: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Ligands: U4Z.17, U42.22
13 PLIP interactions:3 interactions with chain H, 6 interactions with chain I, 4 interactions with chain G,- Hydrophobic interactions: H:F.8, H:V.12, I:W.14, I:L.17, I:F.18, I:W.23, I:V.30, G:I.28, G:I.38, G:I.39, G:I.39
- Hydrogen bonds: H:S.11
- Metal complexes: I:H.26
BCL.26: 16 residues within 4Å:- Chain A: I.39, A.40, H.44
- Chain J: T.16, G.19, A.23, H.27, W.38
- Chain K: S.11, V.14, I.26
- Ligands: BCL.1, U4Z.25, U4Z.28, U42.29, BCL.30
5 PLIP interactions:2 interactions with chain K, 3 interactions with chain J,- Hydrophobic interactions: K:V.14, K:I.26, J:T.16
- pi-Stacking: J:H.27
- Metal complexes: J:H.27
BCL.27: 18 residues within 4Å:- Chain K: T.16, L.20, A.23, H.27, W.38
- Chain L: G.36, I.39, A.40, A.43, H.44, C.47
- Chain N: V.14, I.26
- Chain O: I.54
- Ligands: BCL.30, BCL.45, U4Z.46, U42.49
8 PLIP interactions:4 interactions with chain K, 2 interactions with chain N, 1 interactions with chain O, 1 interactions with chain L,- Hydrophobic interactions: K:T.16, K:W.38, K:W.38, N:V.14, N:I.26, O:I.54, L:A.43
- Metal complexes: K:H.27
BCL.30: 16 residues within 4Å:- Chain K: G.19, A.23, I.26, H.27, F.36
- Chain L: L.37, H.44, C.47, W.53
- Chain O: I.33
- Ligands: BCL.26, BCL.27, U4Z.28, U42.29, BCL.45, U4Z.46
9 PLIP interactions:2 interactions with chain K, 1 interactions with chain O, 6 interactions with chain L,- Hydrophobic interactions: K:I.26, K:F.36, O:I.33, L:L.37, L:W.53, L:W.53, L:W.53, L:W.53
- Metal complexes: L:H.44
BCL.31: 18 residues within 4Å:- Chain A: I.28, K.31, T.32, G.35, I.39
- Chain K: F.8, S.11, V.12
- Chain L: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Ligands: BCL.1, U4Z.25, U42.29
9 PLIP interactions:5 interactions with chain L, 2 interactions with chain A, 2 interactions with chain K,- Hydrophobic interactions: L:L.17, L:F.18, L:W.23, A:K.31, A:T.32, K:V.12
- pi-Cation interactions: L:H.26
- Metal complexes: L:H.26
- Hydrogen bonds: K:S.11
BCL.44: 18 residues within 4Å:- Chain N: V.13, G.19, A.23, H.27, L.31, W.38
- Chain O: I.39, A.40, A.43, H.44
- Chain P: F.6, S.11, I.26
- Ligands: BCL.45, U4Z.46, BCL.52, U4Z.53, U42.55
7 PLIP interactions:3 interactions with chain N, 2 interactions with chain P, 2 interactions with chain O,- Hydrophobic interactions: N:V.13, N:L.31, P:F.6, P:I.26, O:A.43
- Metal complexes: N:H.27
- Hydrogen bonds: O:H.44
BCL.45: 20 residues within 4Å:- Chain N: G.19, M.22, A.23, I.26, H.27
- Chain O: G.36, L.37, A.40, H.44, C.47, W.53
- Chain Q: I.33
- Ligands: BCL.27, BCL.30, BCL.44, U4Z.46, U42.49, BCL.52, U4Z.53, BCL.56
7 PLIP interactions:1 interactions with chain N, 5 interactions with chain O, 1 interactions with chain Q,- Hydrophobic interactions: N:I.26, O:A.40, O:W.53, O:W.53, O:W.53, Q:I.33
- Metal complexes: O:H.44
BCL.50: 18 residues within 4Å:- Chain L: I.28, K.31, T.32, G.35, I.39
- Chain N: E.7, F.8, S.11, V.12
- Chain O: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Ligands: U4Z.28, U42.49
13 PLIP interactions:3 interactions with chain L, 7 interactions with chain O, 3 interactions with chain N,- Hydrophobic interactions: L:I.28, L:K.31, L:I.39, O:W.14, O:L.17, O:F.18, O:W.23, O:V.30, N:F.8, N:V.12
- Hydrogen bonds: O:Y.34, N:S.11
- Metal complexes: O:H.26
BCL.51: 17 residues within 4Å:- Chain P: G.19, L.20, A.23, H.27, W.38
- Chain Q: G.36, I.39, A.40, H.44
- Chain R: F.6, I.26
- Ligands: BCL.52, U4Z.53, U4Z.58, U42.65, BCL.66, BCL.67
4 PLIP interactions:1 interactions with chain P, 3 interactions with chain R,- pi-Stacking: P:H.27
- Hydrophobic interactions: R:F.6, R:I.26, R:I.26
BCL.52: 16 residues within 4Å:- Chain P: G.19, M.22, A.23, I.26, H.27
- Chain Q: G.36, H.44, C.47, W.53
- Ligands: BCL.44, BCL.45, BCL.51, U4Z.53, U42.55, U4Z.58, U42.65
5 PLIP interactions:4 interactions with chain Q, 1 interactions with chain P,- Hydrophobic interactions: Q:W.53, Q:W.53, Q:W.53, P:I.26
- Metal complexes: Q:H.44
BCL.56: 19 residues within 4Å:- Chain O: I.28, T.32, I.38, I.39
- Chain P: E.7, F.8, S.11, V.12, S.15
- Chain Q: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Ligands: BCL.45, U4Z.46, U42.55
13 PLIP interactions:6 interactions with chain Q, 5 interactions with chain O, 2 interactions with chain P,- Hydrophobic interactions: Q:W.14, Q:L.17, Q:F.18, Q:W.23, O:I.28, O:I.28, O:T.32, O:I.38, O:I.39, P:V.12
- Hydrogen bonds: Q:Y.34, P:S.11
- Metal complexes: Q:H.26
BCL.57: 20 residues within 4Å:- Chain R: V.12, V.13, G.19, L.20, A.23, H.27, L.31, W.38
- Chain S: I.39, A.40, A.43, H.44
- Chain T: F.6, I.26
- Ligands: U4Z.58, BCL.66, U42.68, U4Z.70, BCL.71, BCL.72
8 PLIP interactions:2 interactions with chain T, 5 interactions with chain R, 1 interactions with chain S,- Hydrophobic interactions: T:F.6, T:I.26, R:V.12, R:V.13, R:L.31, S:A.43
- pi-Stacking: R:H.27
- Metal complexes: R:H.27
BCL.66: 18 residues within 4Å:- Chain R: M.22, A.23, I.26, H.27, V.30
- Chain S: G.36, A.40, H.44, C.47, W.53
- Chain U: L.37
- Ligands: BCL.51, BCL.57, U4Z.58, U42.65, U42.68, U4Z.70, BCL.72
8 PLIP interactions:2 interactions with chain R, 1 interactions with chain U, 5 interactions with chain S,- Hydrophobic interactions: R:I.26, R:V.30, U:L.37, S:W.53, S:W.53, S:W.53, S:W.53
- Metal complexes: S:H.44
BCL.67: 13 residues within 4Å:- Chain Q: I.28
- Chain R: R.4, F.8, S.11
- Chain S: W.14, L.17, F.18, H.26, V.30, Y.34
- Ligands: BCL.51, U4Z.53, U42.65
11 PLIP interactions:7 interactions with chain S, 2 interactions with chain R, 2 interactions with chain Q,- Hydrophobic interactions: S:W.14, S:L.17, S:F.18, S:V.30, S:Y.34, R:F.8, Q:I.28
- Hydrogen bonds: S:Y.34, R:S.11
- pi-Stacking: S:H.26
- Salt bridges: Q:K.31
BCL.69: 20 residues within 4Å:- Chain T: V.13, T.16, L.20, A.23, H.27, W.38
- Chain U: I.39, A.40, A.43, H.44
- Chain X: F.6, S.11, I.26
- Chain Y: I.54
- Ligands: U4Z.70, BCL.71, U4Z.98, BGL.99, U42.100, BCL.101
11 PLIP interactions:1 interactions with chain U, 1 interactions with chain Y, 6 interactions with chain T, 3 interactions with chain X,- Hydrophobic interactions: U:A.43, Y:I.54, T:V.13, T:T.16, T:W.38, T:W.38, X:F.6, X:F.6, X:I.26
- pi-Stacking: T:H.27
- Metal complexes: T:H.27
BCL.71: 17 residues within 4Å:- Chain T: G.19, A.23, I.26, H.27, F.36
- Chain U: A.40, H.44, C.47, W.53
- Chain Y: I.33
- Ligands: BCL.57, U42.68, BCL.69, U4Z.70, U4Z.98, U42.100, BCL.101
8 PLIP interactions:5 interactions with chain U, 1 interactions with chain Y, 2 interactions with chain T,- Hydrophobic interactions: U:W.53, U:W.53, U:W.53, U:W.53, Y:I.33, T:I.26, T:F.36
- Metal complexes: U:H.44
BCL.72: 20 residues within 4Å:- Chain S: I.28, K.31, T.32
- Chain T: R.4, F.6, E.7, F.8, S.11, S.15
- Chain U: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Ligands: BCL.57, U4Z.58, BCL.66, U42.68
12 PLIP interactions:8 interactions with chain U, 2 interactions with chain T, 2 interactions with chain S,- Hydrophobic interactions: U:W.14, U:L.17, U:F.18, U:W.23, U:V.30, T:F.8, S:K.31
- Hydrogen bonds: U:Y.34, T:S.11
- pi-Cation interactions: U:H.26
- Metal complexes: U:H.26
- Salt bridges: S:K.31
BCL.73: 16 residues within 4Å:- Chain V: Y.87, W.167, F.185, H.192, L.193
- Chain W: Y.520, M.526, I.529, F.530, L.533, G.534
- Ligands: BCL.74, BPH.75, PGV.79, BCL.90, LHG.131
9 PLIP interactions:3 interactions with chain W, 6 interactions with chain V,- Hydrophobic interactions: W:Y.520, W:I.529, W:F.530, V:Y.87, V:Y.87, V:W.167, V:F.185, V:L.193
- Metal complexes: V:H.192
BCL.74: 21 residues within 4Å:- Chain V: F.136, V.163, S.166, L.170, V.196, I.199, Y.201, F.206, F.207, H.212, I.216, S.278, N.279, C.281, I.282
- Chain W: T.509, Y.520
- Ligands: BCL.73, BPH.75, PGV.79, BCL.90
10 PLIP interactions:10 interactions with chain V,- Hydrophobic interactions: V:F.136, V:V.163, V:L.170, V:V.196, V:I.199, V:Y.201, V:F.206, V:F.206, V:I.216
- Metal complexes: V:H.212
BCL.90: 18 residues within 4Å:- Chain V: F.220
- Chain W: F.386, L.479, W.508, T.509, V.512, S.513, F.519, Y.520, H.525, S.528, I.529, G.603, L.607
- Ligands: BCL.73, BCL.74, BPH.77, BPH.91
10 PLIP interactions:9 interactions with chain W, 1 interactions with chain V,- Hydrophobic interactions: W:F.386, W:L.479, W:V.512, W:F.519, W:Y.520, W:I.529, W:I.529, V:F.220
- pi-Stacking: W:F.519
- Metal complexes: W:H.525
BCL.97: 20 residues within 4Å:- Chain X: V.12, T.16, L.20, A.23, H.27, W.38
- Chain Y: G.36, I.39, A.40, A.43, H.44
- Chain Z: F.6, S.15, I.26
- Ligands: U4Z.98, BCL.101, U4Z.104, PGV.106, U42.107, BCL.108
6 PLIP interactions:1 interactions with chain Y, 2 interactions with chain Z, 3 interactions with chain X,- Hydrophobic interactions: Y:A.43, Z:F.6, Z:I.26, X:V.12, X:T.16
- pi-Stacking: X:H.27
BCL.101: 20 residues within 4Å:- Chain 0: I.33
- Chain X: G.19, A.23, I.26, H.27, F.36
- Chain Y: G.36, L.37, A.40, H.44, C.47, W.53
- Ligands: BCL.69, BCL.71, BCL.97, U4Z.98, U42.100, U42.107, BCL.108, BCL.109
8 PLIP interactions:5 interactions with chain Y, 2 interactions with chain X, 1 interactions with chain 0,- Hydrophobic interactions: Y:W.53, Y:W.53, Y:W.53, Y:W.53, X:I.26, X:F.36, 0:I.33
- Metal complexes: Y:H.44
BCL.102: 15 residues within 4Å:- Chain U: I.28, K.31, T.32, G.35
- Chain X: F.8, S.11
- Chain Y: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Ligands: U4Z.70, U42.100
14 PLIP interactions:8 interactions with chain Y, 4 interactions with chain U, 2 interactions with chain X,- Hydrophobic interactions: Y:W.14, Y:W.14, Y:L.17, Y:F.18, Y:W.23, Y:V.30, U:I.28, U:I.28, U:K.31, U:K.31, X:F.8
- Hydrogen bonds: Y:Y.34, X:S.11
- Metal complexes: Y:H.26
BCL.103: 22 residues within 4Å:- Chain 0: G.36, I.39, A.40, A.43, H.44, C.47
- Chain 1: F.6, V.14, I.26
- Chain 2: I.54
- Chain Z: T.16, G.19, L.20, A.23, H.27, W.38
- Ligands: U4Z.104, PGV.105, BCL.108, U42.111, BCL.112, U4Z.114
10 PLIP interactions:1 interactions with chain 2, 4 interactions with chain Z, 3 interactions with chain 1, 2 interactions with chain 0,- Hydrophobic interactions: 2:I.54, Z:T.16, Z:W.38, Z:W.38, 1:F.6, 1:V.14, 1:I.26, 0:A.43
- Metal complexes: Z:H.27
- Hydrogen bonds: 0:H.44
BCL.108: 18 residues within 4Å:- Chain 0: G.36, L.37, A.40, H.44, C.47, W.53
- Chain 2: I.33
- Chain Z: G.19, A.23, I.26, H.27
- Ligands: BCL.97, BCL.101, BCL.103, U4Z.104, U42.107, U42.111, U4Z.114
7 PLIP interactions:5 interactions with chain 0, 1 interactions with chain 2, 1 interactions with chain Z,- Hydrophobic interactions: 0:W.53, 0:W.53, 0:W.53, 0:W.53, 2:I.33, Z:I.26
- Metal complexes: 0:H.44
BCL.109: 21 residues within 4Å:- Chain 0: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Chain Y: I.28, K.31, T.32, I.38, I.39
- Chain Z: F.6, E.7, F.8, S.11, V.12, S.15
- Ligands: U4Z.98, BCL.101, U42.107
15 PLIP interactions:3 interactions with chain Z, 6 interactions with chain Y, 6 interactions with chain 0,- Hydrophobic interactions: Z:F.8, Z:V.12, Y:I.28, Y:I.28, Y:K.31, Y:I.38, Y:I.38, Y:I.39, 0:W.14, 0:L.17, 0:F.18, 0:W.23, 0:V.30
- Hydrogen bonds: Z:S.11
- Metal complexes: 0:H.26
BCL.110: 15 residues within 4Å:- Chain 1: T.16, L.20, A.23, H.27, W.38
- Chain 2: G.36, I.39, A.40, H.44
- Chain 3: I.26
- Ligands: BCL.112, U4Z.114, U4Z.116, U42.118, BCL.119
6 PLIP interactions:5 interactions with chain 1, 1 interactions with chain 3,- Hydrophobic interactions: 1:T.16, 1:W.38, 1:W.38, 3:I.26
- pi-Stacking: 1:H.27
- Metal complexes: 1:H.27
BCL.112: 20 residues within 4Å:- Chain 1: G.19, M.22, A.23, I.26, H.27, F.36
- Chain 2: G.36, L.37, A.40, H.44, C.47, W.53
- Chain 4: I.33
- Ligands: BCL.103, BCL.110, U42.111, U4Z.114, U4Z.116, U42.118, BCL.119
9 PLIP interactions:1 interactions with chain 4, 5 interactions with chain 2, 3 interactions with chain 1,- Hydrophobic interactions: 4:I.33, 2:W.53, 2:W.53, 2:W.53, 2:W.53, 1:I.26, 1:F.36
- Metal complexes: 2:H.44
- Hydrogen bonds: 1:H.27
BCL.113: 19 residues within 4Å:- Chain 0: I.28, K.31, T.32, I.39
- Chain 1: F.6, E.7, F.8, S.11, V.12, S.15
- Chain 2: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Ligands: U4Z.104, U42.111
15 PLIP interactions:3 interactions with chain 1, 9 interactions with chain 2, 3 interactions with chain 0,- Hydrophobic interactions: 1:F.8, 1:V.12, 2:W.14, 2:W.14, 2:L.17, 2:F.18, 2:W.23, 2:V.30, 0:I.28, 0:I.28, 0:I.39
- Hydrogen bonds: 1:S.11, 2:Y.34
- Salt bridges: 2:H.26
- Metal complexes: 2:H.26
BCL.115: 17 residues within 4Å:- Chain 3: T.16, G.19, A.23, H.27, W.38
- Chain 4: G.36, I.39, A.40, H.44
- Chain 5: T.10, I.26
- Chain 6: I.54
- Ligands: U4Z.116, BCL.119, U42.121, U4Z.123, BCL.127
5 PLIP interactions:2 interactions with chain 5, 1 interactions with chain 6, 2 interactions with chain 3,- Hydrophobic interactions: 5:T.10, 5:I.26, 6:I.54, 3:T.16
- pi-Stacking: 3:H.27
BCL.119: 17 residues within 4Å:- Chain 3: G.19, A.23, I.26, H.27
- Chain 4: T.32, G.36, L.37, H.44, C.47, W.53
- Chain 6: I.33
- Ligands: BCL.110, BCL.112, BCL.115, U4Z.116, U42.118, U4Z.123
9 PLIP interactions:6 interactions with chain 4, 2 interactions with chain 6, 1 interactions with chain 3,- Hydrophobic interactions: 4:T.32, 4:W.53, 4:W.53, 4:W.53, 4:W.53, 6:I.33, 6:I.33, 3:I.26
- Metal complexes: 4:H.44
BCL.120: 16 residues within 4Å:- Chain 2: I.28, T.32, G.35, I.38
- Chain 3: F.8, S.11, V.12
- Chain 4: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Ligands: U4Z.114, U42.118
13 PLIP interactions:7 interactions with chain 4, 3 interactions with chain 3, 3 interactions with chain 2,- Hydrophobic interactions: 4:W.14, 4:L.17, 4:F.18, 4:F.18, 4:W.23, 4:V.30, 3:F.8, 3:V.12, 2:I.28, 2:I.38
- Metal complexes: 4:H.26
- Hydrogen bonds: 3:S.11
- Salt bridges: 2:K.31
BCL.122: 19 residues within 4Å:- Chain 5: T.16, G.19, L.20, H.27, L.31
- Chain 6: G.36, I.39, A.40, H.44, C.47
- Chain 7: M.6, F.9, L.13, F.20
- Chain M: I.12
- Ligands: UNL.42, U4Z.123, UNL.125, BCL.127
8 PLIP interactions:4 interactions with chain 7, 3 interactions with chain 5, 1 interactions with chain M,- Hydrophobic interactions: 7:F.9, 7:F.9, 7:L.13, 7:F.20, 5:T.16, 5:L.31, M:I.12
- Metal complexes: 5:H.27
BCL.127: 17 residues within 4Å:- Chain 5: G.19, A.23, I.26, H.27, V.30, F.36
- Chain 6: I.33, A.40, H.44, C.47, W.53
- Chain 7: F.20, L.21
- Ligands: BCL.115, U42.121, BCL.122, U4Z.123
10 PLIP interactions:3 interactions with chain 5, 6 interactions with chain 6, 1 interactions with chain 7,- Hydrophobic interactions: 5:I.26, 5:V.30, 5:F.36, 6:A.40, 6:W.53, 6:W.53, 6:W.53, 6:W.53, 7:L.21
- Metal complexes: 6:H.44
BCL.128: 17 residues within 4Å:- Chain 4: I.28, T.32, G.35, I.38, I.39
- Chain 5: F.6, F.8, S.11
- Chain 6: W.14, L.17, F.18, W.23, H.26, V.30, Y.34
- Ligands: U4Z.116, U42.121
14 PLIP interactions:7 interactions with chain 6, 5 interactions with chain 4, 2 interactions with chain 5,- Hydrophobic interactions: 6:W.14, 6:W.14, 6:L.17, 6:F.18, 6:W.23, 6:V.30, 4:I.28, 4:I.38, 4:I.39, 4:I.39, 5:F.6
- Metal complexes: 6:H.26
- Salt bridges: 4:K.31
- Hydrogen bonds: 5:S.11
- 14 x U42: [(2~{R},3~{S},4~{S},5~{R},6~{R})-6-[(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E})-2,6,10,14,19,23-hexamethyl-25-(2,6,6-trimethylcyclohexen-1-yl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl pentadecanoate(Non-covalent)
U42.3: 14 residues within 4Å:- Chain A: V.41, H.44, W.48, W.53, I.54
- Chain I: I.39, A.43, C.47, W.50
- Ligands: BCL.1, BCL.2, BCL.20, U4Z.21, BCL.23
9 PLIP interactions:6 interactions with chain A, 3 interactions with chain I- Hydrophobic interactions: A:V.41, A:W.48, A:W.48, A:W.53, A:I.54, A:I.54, I:I.39, I:A.43, I:W.50
U42.12: 13 residues within 4Å:- Chain C: A.43, L.46, W.50
- Chain E: A.40, V.41, H.44, W.48, W.53, I.54
- Ligands: BCL.4, BCL.7, BCL.13, BCL.14
9 PLIP interactions:3 interactions with chain C, 6 interactions with chain E- Hydrophobic interactions: C:A.43, C:L.46, C:W.50, E:A.40, E:V.41, E:W.48, E:W.53, E:I.54, E:I.54
U42.15: 10 residues within 4Å:- Chain E: L.46, W.50
- Chain G: H.44, W.48, I.54
- Ligands: BCL.9, U4Z.10, BCL.13, BCL.18, BCL.19
6 PLIP interactions:4 interactions with chain G, 2 interactions with chain E- Hydrophobic interactions: G:W.48, G:W.48, G:I.54, G:I.54, E:L.46, E:W.50
U42.22: 11 residues within 4Å:- Chain G: I.28, A.43, C.47, W.50
- Chain I: W.48, W.53, I.54
- Ligands: BCL.16, U4Z.17, BCL.23, BCL.24
5 PLIP interactions:2 interactions with chain I, 3 interactions with chain G- Hydrophobic interactions: I:W.53, I:I.54, G:I.28, G:A.43, G:W.50
U42.29: 11 residues within 4Å:- Chain A: T.32, L.46, W.50
- Chain L: V.41, H.44, W.48, I.54
- Ligands: BCL.1, BCL.26, BCL.30, BCL.31
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain L- Hydrophobic interactions: A:L.46, A:W.50, L:V.41, L:I.54
U42.49: 11 residues within 4Å:- Chain L: I.39, L.46, W.50
- Chain O: A.40, H.44, W.48, W.53, I.54
- Ligands: BCL.27, BCL.45, BCL.50
9 PLIP interactions:5 interactions with chain O, 4 interactions with chain L- Hydrophobic interactions: O:A.40, O:W.48, O:W.53, O:I.54, O:I.54, L:I.39, L:L.46, L:L.46, L:W.50
U42.55: 12 residues within 4Å:- Chain O: I.28, I.39, L.46, W.50
- Chain Q: V.41, H.44, W.48, I.54
- Ligands: BCL.44, U4Z.46, BCL.52, BCL.56
8 PLIP interactions:5 interactions with chain Q, 3 interactions with chain O- Hydrophobic interactions: Q:V.41, Q:W.48, Q:W.48, Q:I.54, Q:I.54, O:I.28, O:I.39, O:W.50
U42.65: 14 residues within 4Å:- Chain Q: I.28, T.32, I.39, L.46, W.50
- Chain S: A.40, H.44, W.48, I.54
- Ligands: BCL.51, BCL.52, U4Z.53, BCL.66, BCL.67
7 PLIP interactions:4 interactions with chain Q, 3 interactions with chain S- Hydrophobic interactions: Q:I.28, Q:I.39, Q:L.46, Q:W.50, S:A.40, S:W.48, S:I.54
U42.68: 13 residues within 4Å:- Chain S: I.28, L.46, W.50
- Chain U: L.37, V.41, H.44, W.48, W.53, I.54
- Ligands: BCL.57, BCL.66, BCL.71, BCL.72
9 PLIP interactions:5 interactions with chain U, 4 interactions with chain S- Hydrophobic interactions: U:L.37, U:V.41, U:W.48, U:W.53, U:I.54, S:I.28, S:L.46, S:L.46, S:W.50
U42.100: 11 residues within 4Å:- Chain U: I.39, W.50
- Chain Y: A.40, V.41, H.44, W.48, I.54
- Ligands: BCL.69, BCL.71, BCL.101, BCL.102
5 PLIP interactions:3 interactions with chain Y, 2 interactions with chain U- Hydrophobic interactions: Y:A.40, Y:V.41, Y:I.54, U:I.39, U:W.50
U42.107: 14 residues within 4Å:- Chain 0: A.40, V.41, H.44, W.48, W.53, I.54
- Chain Y: I.39, L.46, C.47, W.50
- Ligands: BCL.97, BCL.101, BCL.108, BCL.109
5 PLIP interactions:3 interactions with chain 0, 2 interactions with chain Y- Hydrophobic interactions: 0:A.40, 0:V.41, 0:W.53, Y:L.46, Y:W.50
U42.111: 13 residues within 4Å:- Chain 0: I.39, L.46, C.47, W.50
- Chain 2: V.41, H.44, W.48, W.53, I.54
- Ligands: BCL.103, BCL.108, BCL.112, BCL.113
7 PLIP interactions:4 interactions with chain 2, 3 interactions with chain 0- Hydrophobic interactions: 2:V.41, 2:W.48, 2:W.53, 2:I.54, 0:I.39, 0:L.46, 0:W.50
U42.118: 12 residues within 4Å:- Chain 2: W.50
- Chain 4: A.40, V.41, H.44, W.48, W.53, I.54
- Ligands: BCL.110, BCL.112, U4Z.114, BCL.119, BCL.120
6 PLIP interactions:5 interactions with chain 4, 1 interactions with chain 2- Hydrophobic interactions: 4:A.40, 4:V.41, 4:W.48, 4:W.53, 4:I.54, 2:W.50
U42.121: 13 residues within 4Å:- Chain 4: I.28, T.32, I.39, C.47, W.50
- Chain 6: H.44, W.48, W.53, I.54
- Ligands: BCL.115, U4Z.116, BCL.127, BCL.128
6 PLIP interactions:3 interactions with chain 6, 3 interactions with chain 4- Hydrophobic interactions: 6:W.48, 6:W.53, 6:I.54, 4:I.28, 4:I.39, 4:W.50
- 16 x U4Z: gamma-Carotene(Non-covalent)
U4Z.5: 17 residues within 4Å:- Chain B: V.12, S.15, T.16, L.18, G.19
- Chain C: V.25, I.28, T.32, I.33
- Chain D: F.6, S.11
- Chain M: M.31, S.35, I.38
- Ligands: BCL.4, BCL.7, BCL.14
7 PLIP interactions:4 interactions with chain C, 2 interactions with chain B, 1 interactions with chain M- Hydrophobic interactions: C:V.25, C:I.28, C:T.32, C:I.33, B:V.12, B:L.18, M:I.38
U4Z.10: 18 residues within 4Å:- Chain B: A.23, L.24, H.27, W.38
- Chain D: V.12, S.15, G.19, M.22
- Chain E: V.25, I.28, T.32, I.33
- Chain F: F.6
- Ligands: BCL.4, BCL.9, BCL.13, U42.15, BCL.19
9 PLIP interactions:4 interactions with chain E, 3 interactions with chain B, 1 interactions with chain F, 1 interactions with chain D- Hydrophobic interactions: E:V.25, E:I.28, E:T.32, E:I.33, B:A.23, B:L.24, B:W.38, F:F.6, D:V.12
U4Z.17: 20 residues within 4Å:- Chain D: H.27, W.38
- Chain F: V.12, S.15, T.16, G.19, M.22, L.25
- Chain G: V.25, I.28, T.32, I.33
- Chain H: F.6, S.11
- Ligands: BCL.9, BCL.13, BCL.16, BCL.18, U42.22, BCL.24
8 PLIP interactions:1 interactions with chain D, 4 interactions with chain G, 2 interactions with chain F, 1 interactions with chain H- Hydrophobic interactions: D:W.38, G:V.25, G:I.28, G:T.32, G:I.33, F:V.12, F:L.25, H:F.6
U4Z.21: 19 residues within 4Å:- Chain F: L.24, H.27, W.38
- Chain H: V.12, S.15, T.16, G.19, M.22
- Chain I: V.25, I.28, V.29, T.32, I.33
- Ligands: BCL.2, U42.3, BCL.16, BCL.18, BCL.20, BCL.23
8 PLIP interactions:5 interactions with chain I, 1 interactions with chain H, 2 interactions with chain F- Hydrophobic interactions: I:V.25, I:I.28, I:V.29, I:T.32, I:I.33, H:V.12, F:L.24, F:W.38
U4Z.25: 19 residues within 4Å:- Chain A: V.25, I.28, T.32, I.33
- Chain H: L.24, H.27, F.28, W.38
- Chain J: V.12, S.15, T.16, G.19, M.22
- Chain K: F.6, S.11
- Ligands: BCL.20, BCL.23, BCL.26, BCL.31
11 PLIP interactions:4 interactions with chain H, 2 interactions with chain K, 1 interactions with chain J, 4 interactions with chain A- Hydrophobic interactions: H:L.24, H:H.27, H:F.28, H:W.38, K:F.6, K:F.6, J:V.12, A:V.25, A:I.28, A:T.32, A:I.33
U4Z.28: 18 residues within 4Å:- Chain J: L.20, A.23, H.27, W.38
- Chain K: V.12, S.15, T.16, G.19, M.22
- Chain L: V.25, I.28, V.29, T.32, I.33
- Ligands: BCL.1, BCL.26, BCL.30, BCL.50
9 PLIP interactions:5 interactions with chain L, 3 interactions with chain J, 1 interactions with chain K- Hydrophobic interactions: L:V.25, L:I.28, L:V.29, L:T.32, L:I.33, J:L.20, J:A.23, J:W.38, K:V.12
U4Z.32: 11 residues within 4Å:- Chain B: L.18, L.25
- Chain M: V.16, F.20, V.23, I.27, S.28, S.35, I.36, F.39
- Ligands: BCL.8
10 PLIP interactions:8 interactions with chain M, 2 interactions with chain B- Hydrophobic interactions: M:V.16, M:F.20, M:F.20, M:V.23, M:I.27, M:I.27, M:I.36, M:F.39, B:L.18, B:L.25
U4Z.46: 18 residues within 4Å:- Chain K: L.20, H.27, W.38
- Chain N: V.12, S.15, T.16, G.19, M.22
- Chain O: V.25, I.28, T.32
- Chain P: F.6
- Ligands: BCL.27, BCL.30, BCL.44, BCL.45, U42.55, BCL.56
7 PLIP interactions:3 interactions with chain O, 2 interactions with chain K, 1 interactions with chain P, 1 interactions with chain N- Hydrophobic interactions: O:V.25, O:I.28, O:T.32, K:L.20, K:W.38, P:F.6, N:V.12
U4Z.53: 21 residues within 4Å:- Chain N: A.23, H.27, L.31
- Chain P: V.12, S.15, T.16, L.18, G.19, M.22
- Chain Q: V.25, I.28, T.32, I.33
- Chain R: F.6, S.11
- Ligands: BCL.44, BCL.45, BCL.51, BCL.52, U42.65, BCL.67
9 PLIP interactions:4 interactions with chain Q, 2 interactions with chain N, 2 interactions with chain P, 1 interactions with chain R- Hydrophobic interactions: Q:V.25, Q:I.28, Q:T.32, Q:I.33, N:A.23, N:L.31, P:V.12, P:L.18, R:F.6
U4Z.58: 18 residues within 4Å:- Chain P: H.27
- Chain R: V.12, S.15, L.18, G.19, M.22
- Chain S: V.25, I.28, V.29, T.32, I.33
- Chain T: F.6, S.11
- Ligands: BCL.51, BCL.52, BCL.57, BCL.66, BCL.72
9 PLIP interactions:1 interactions with chain P, 1 interactions with chain T, 2 interactions with chain R, 5 interactions with chain S- Hydrophobic interactions: P:H.27, T:F.6, R:V.12, R:L.18, S:V.25, S:I.28, S:V.29, S:T.32, S:I.33
U4Z.70: 18 residues within 4Å:- Chain R: L.24, H.27, L.31
- Chain T: V.12, S.15, T.16, G.19
- Chain U: V.25, I.28, T.32, I.33
- Chain X: F.6, S.11
- Ligands: BCL.57, BCL.66, BCL.69, BCL.71, BCL.102
7 PLIP interactions:3 interactions with chain U, 2 interactions with chain R, 1 interactions with chain X, 1 interactions with chain T- Hydrophobic interactions: U:V.25, U:I.28, U:I.33, R:L.24, R:L.31, X:F.6, T:V.12
U4Z.98: 22 residues within 4Å:- Chain T: L.24, H.27, F.28, W.38
- Chain X: V.12, S.15, T.16, L.18, G.19, M.22
- Chain Y: V.25, I.28, V.29, T.32, I.33
- Chain Z: F.6, S.11
- Ligands: BCL.69, BCL.71, BCL.97, BCL.101, BCL.109
12 PLIP interactions:5 interactions with chain Y, 2 interactions with chain X, 1 interactions with chain Z, 4 interactions with chain T- Hydrophobic interactions: Y:V.25, Y:I.28, Y:V.29, Y:T.32, Y:I.33, X:V.12, X:L.18, Z:F.6, T:L.24, T:H.27, T:F.28, T:W.38
U4Z.104: 20 residues within 4Å:- Chain 0: V.25, I.28, V.29, T.32, I.33
- Chain 1: F.6, S.11
- Chain X: L.24, H.27, W.38
- Chain Z: V.12, S.15, T.16, L.18, G.19, M.22
- Ligands: BCL.97, BCL.103, BCL.108, BCL.113
9 PLIP interactions:2 interactions with chain Z, 2 interactions with chain X, 4 interactions with chain 0, 1 interactions with chain 1- Hydrophobic interactions: Z:V.12, Z:L.18, X:L.24, X:W.38, 0:V.25, 0:I.28, 0:T.32, 0:I.33, 1:F.6
U4Z.114: 20 residues within 4Å:- Chain 1: V.12, S.15, T.16, G.19, M.22
- Chain 2: V.25, I.28, V.29, T.32, I.33
- Chain Z: L.20, L.24, H.27, F.28
- Ligands: BCL.103, BCL.108, BCL.110, BCL.112, U42.118, BCL.120
10 PLIP interactions:1 interactions with chain 1, 4 interactions with chain Z, 5 interactions with chain 2- Hydrophobic interactions: 1:V.12, Z:L.20, Z:L.24, Z:H.27, Z:F.28, 2:V.25, 2:I.28, 2:V.29, 2:T.32, 2:I.33
U4Z.116: 17 residues within 4Å:- Chain 1: A.23, H.27
- Chain 3: V.12, S.15, G.19, M.22
- Chain 4: V.25, I.28, V.29, T.32, I.33
- Ligands: BCL.110, BCL.112, BCL.115, BCL.119, U42.121, BCL.128
6 PLIP interactions:4 interactions with chain 4, 1 interactions with chain 3, 1 interactions with chain 1- Hydrophobic interactions: 4:V.25, 4:I.28, 4:T.32, 4:I.33, 3:V.12, 1:A.23
U4Z.123: 20 residues within 4Å:- Chain 3: A.23, H.27
- Chain 5: V.12, S.15, T.16, G.19, M.22
- Chain 6: V.25, I.28, V.29, T.32, I.33
- Chain 7: I.24
- Chain M: P.6, T.7, F.9
- Ligands: BCL.115, BCL.119, BCL.122, BCL.127
8 PLIP interactions:4 interactions with chain 6, 1 interactions with chain 3, 1 interactions with chain M, 1 interactions with chain 7, 1 interactions with chain 5- Hydrophobic interactions: 6:V.25, 6:I.28, 6:V.29, 6:I.33, 3:A.23, M:F.9, 7:I.24, 5:V.12
- 3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.6: 11 residues within 4Å:- Chain B: L.31, S.32, L.39
- Chain D: L.24, L.25, F.28, V.29, S.32, S.33
- Ligands: BGL.11, UNL.88
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain D- Hydrogen bonds: B:L.39, D:V.29
- Hydrophobic interactions: D:L.24, D:L.25, D:V.29
LMT.48: 9 residues within 4Å:- Chain N: E.7, R.9, T.10, V.13, L.17
- Chain W: W.378, L.450, A.454, T.458
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:T.10
LMT.117: 13 residues within 4Å:- Chain 3: L.25, F.28, L.31, S.32, L.39
- Chain 5: S.32, G.34
- Chain V: L.114, N.115, V.116, L.127, V.130
- Ligands: BGL.87
7 PLIP interactions:4 interactions with chain V, 2 interactions with chain 5, 1 interactions with chain 3- Hydrophobic interactions: V:L.127, V:V.130, 3:L.25
- Hydrogen bonds: V:V.116, V:V.116, 5:S.32, 5:G.34
- 13 x BGL: 2-O-octyl-beta-D-glucopyranose(Non-covalent)
BGL.11: 8 residues within 4Å:- Chain D: S.32
- Chain F: L.25
- Chain V: F.298, K.301, M.302, P.303
- Ligands: LMT.6, UNL.88
4 PLIP interactions:1 interactions with chain F, 2 interactions with chain D, 1 interactions with chain V- Hydrophobic interactions: F:L.25
- Hydrogen bonds: D:S.32, D:S.32, V:K.301
BGL.40: 3 residues within 4Å:- Chain B: F.6
- Chain M: Y.21
- Ligands: BGL.41
2 PLIP interactions:1 interactions with chain M, 1 interactions with chain B- Hydrogen bonds: M:R.17
- Hydrophobic interactions: B:F.6
BGL.41: 6 residues within 4Å:- Chain M: E.11, T.15, R.17, G.18, Y.21
- Ligands: BGL.40
2 PLIP interactions:2 interactions with chain M- Hydrophobic interactions: M:Y.21, M:Y.21
BGL.47: 6 residues within 4Å:- Chain N: F.28, L.31, S.32
- Chain W: L.426, L.489
- Ligands: BGL.54
3 PLIP interactions:2 interactions with chain W, 1 interactions with chain N- Hydrophobic interactions: W:L.489, N:F.28
- Hydrogen bonds: W:L.426
BGL.54: 7 residues within 4Å:- Chain P: V.29, S.32, S.33
- Chain W: F.486, L.489, F.608
- Ligands: BGL.47
3 PLIP interactions:2 interactions with chain W, 1 interactions with chain P- Hydrophobic interactions: W:F.486, W:F.608
- Hydrogen bonds: P:S.32
BGL.59: 6 residues within 4Å:- Chain R: F.28
- Chain W: L.613, W.620
- Ligands: BGL.63
- Chain a: W.17, S.18
4 PLIP interactions:1 interactions with chain R, 1 interactions with chain a, 2 interactions with chain W- Hydrophobic interactions: R:F.28, W:L.613
- Hydrogen bonds: a:S.18, W:W.620
BGL.63: 5 residues within 4Å:- Chain R: L.31, S.32, W.38
- Ligands: BGL.59
- Chain a: W.17
5 PLIP interactions:3 interactions with chain R, 2 interactions with chain a- Hydrophobic interactions: R:L.31, R:W.38, a:W.17
- Hydrogen bonds: R:S.32, a:W.17
BGL.83: 3 residues within 4Å:- Chain V: R.53, L.148
- Ligands: PEF.89
1 PLIP interactions:1 interactions with chain V- Hydrogen bonds: V:R.53
BGL.84: 7 residues within 4Å:- Chain V: A.294, F.295, G.297, F.298
- Ligands: BGL.85, UNL.86, UNL.88
4 PLIP interactions:4 interactions with chain V- Hydrophobic interactions: V:F.295, V:F.295, V:F.298, V:F.298
BGL.85: 6 residues within 4Å:- Chain V: F.288, K.290, D.291
- Ligands: UNL.82, BGL.84, UNL.86
2 PLIP interactions:2 interactions with chain V- Hydrogen bonds: V:K.290, V:D.291
BGL.87: 7 residues within 4Å:- Chain 5: S.32
- Chain V: G.113, L.114, N.115, W.181
- Ligands: LMT.117, UNL.126
3 PLIP interactions:3 interactions with chain V- Hydrophobic interactions: V:L.114, V:W.181
- Hydrogen bonds: V:L.114
BGL.99: 6 residues within 4Å:- Chain T: L.17
- Chain X: E.7, T.10
- Ligands: BCL.69, UNL.132
- Chain a: R.39
4 PLIP interactions:2 interactions with chain X, 1 interactions with chain T, 1 interactions with chain a- Hydrogen bonds: X:E.7, X:T.10
- Hydrophobic interactions: T:L.17
- Salt bridges: a:R.39
BGL.129: 4 residues within 4Å:- Chain 8: V.22, Y.26, T.30
- Ligands: UNL.130
2 PLIP interactions:2 interactions with chain 8- Hydrophobic interactions: 8:V.22, 8:Y.26
- 4 x HEC: HEME C(Covalent)
HEC.33: 25 residues within 4Å:- Chain M: M.78, Y.81, Q.89, A.90, V.91, Q.92, V.93, L.94, I.102, S.103, M.106, V.107, V.110, S.111, V.116, D.117, C.118, C.121, H.122, F.127, A.128, K.139, A.142, R.143, M.146
15 PLIP interactions:15 interactions with chain M,- Hydrophobic interactions: M:M.78, M:I.102, M:V.107, M:V.110, M:V.116, M:F.127, M:K.139
- Hydrogen bonds: M:Q.89, M:A.90, M:Q.92, M:V.93, M:L.94
- Salt bridges: M:R.143
- pi-Cation interactions: M:K.139
- Metal complexes: M:H.122
HEC.34: 20 residues within 4Å:- Chain M: L.114, Y.120, K.138, M.145, M.146, M.148, S.149, I.169, T.170, C.171, T.173, C.174, H.175, A.179, A.180, G.181, L.182, M.286, A.287, K.289
9 PLIP interactions:9 interactions with chain M,- Hydrophobic interactions: M:L.114, M:M.145, M:I.169, M:L.182
- Hydrogen bonds: M:G.181, M:L.182
- Salt bridges: M:K.138, M:K.289
- Metal complexes: M:H.175
HEC.35: 25 residues within 4Å:- Chain M: Y.205, P.206, G.207, G.208, L.209, V.210, V.211, T.212, N.225, Q.226, M.229, Y.230, M.232, N.233, G.239, C.240, C.243, H.244, F.249, P.250, K.257, S.260
- Chain V: Y.204
- Chain W: I.514
- Ligands: HEC.36
15 PLIP interactions:13 interactions with chain M, 1 interactions with chain W, 1 interactions with chain V,- Hydrophobic interactions: M:M.229, M:M.232, M:N.233, M:F.249, M:F.249, M:K.257, W:I.514, V:Y.204
- Hydrogen bonds: M:G.207, M:G.208, M:L.209, M:V.211, M:T.212, M:T.212
- Metal complexes: M:H.244
HEC.36: 21 residues within 4Å:- Chain M: L.160, V.164, G.166, Y.167, I.169, M.232, M.236, Q.256, H.259, S.260, M.263, L.264, M.266, T.267, S.292, C.293, C.296, H.297, N.301, P.303
- Ligands: HEC.35
12 PLIP interactions:12 interactions with chain M,- Hydrophobic interactions: M:L.160, M:I.169, M:I.169, M:H.259, M:L.264, M:T.267
- Hydrogen bonds: M:G.166, M:Y.167, M:Y.167, M:H.259, M:N.301
- Metal complexes: M:H.297
- 1 x CA: CALCIUM ION(Non-covalent)
CA.37: 5 residues within 4Å:- Chain M: M.190, N.191, L.193, N.195
- Ligands: PGV.39
2 PLIP interactions:2 interactions with chain M- Metal complexes: M:M.190, M:L.193
- 9 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
PGV.38: 14 residues within 4Å:- Chain 8: W.3, T.7, L.10, M.11, L.14
- Chain B: L.25, F.28, S.32
- Chain M: F.43, T.47, P.48, P.50
- Ligands: UNL.82, UNL.86
11 PLIP interactions:5 interactions with chain 8, 2 interactions with chain M, 4 interactions with chain B- Hydrophobic interactions: 8:W.3, 8:T.7, 8:L.10, 8:M.11, 8:L.14, M:F.43, B:L.25, B:L.25, B:F.28, B:F.28
- Hydrogen bonds: M:P.48
PGV.39: 17 residues within 4Å:- Chain M: M.190, N.191, T.192, L.193
- Chain V: Y.208, P.210, T.217, W.296, W.299, D.300
- Chain W: E.411, W.413, N.414, F.502, R.503
- Ligands: CA.37, BPH.91
8 PLIP interactions:5 interactions with chain V, 3 interactions with chain W- Hydrophobic interactions: V:P.210, V:W.296, V:W.296, V:W.299, V:W.299, W:W.413, W:F.502
- Salt bridges: W:R.503
PGV.78: 13 residues within 4Å:- Chain T: F.28
- Chain V: N.99, A.102
- Chain W: K.625
- Chain X: L.18, V.21, L.25, F.28
- Chain a: P.13, W.14, P.15, F.24, L.32
13 PLIP interactions:4 interactions with chain X, 3 interactions with chain V, 1 interactions with chain T, 5 interactions with chain a- Hydrophobic interactions: X:L.18, X:V.21, X:L.25, X:F.28, T:F.28, a:F.24, a:F.24, a:F.24, a:F.24, a:L.32
- Hydrogen bonds: V:T.97, V:T.97, V:N.99
PGV.79: 14 residues within 4Å:- Chain V: G.65, R.66, F.67, V.84
- Chain W: R.576, M.579, G.580
- Ligands: BCL.73, BCL.74, BPH.75, UNL.81, MQE.93, PGV.105, PGV.106
5 PLIP interactions:4 interactions with chain V, 1 interactions with chain W- Hydrophobic interactions: V:V.84, V:V.84
- Hydrogen bonds: V:R.66, W:R.576
- Salt bridges: V:R.66
PGV.80: 8 residues within 4Å:- Chain 3: T.16, L.17
- Chain 5: R.9, V.14, L.18
- Chain V: L.50, R.53, F.54
7 PLIP interactions:2 interactions with chain 5, 2 interactions with chain 3, 3 interactions with chain V- Hydrophobic interactions: 5:V.14, 5:L.18, 3:T.16, 3:L.17, V:L.50, V:F.54, V:F.54
PGV.94: 12 residues within 4Å:- Chain P: L.17
- Chain V: R.239
- Chain W: W.453, Y.457, K.461, T.467, W.471, A.474, S.478, F.481, F.486
- Ligands: UNL.64
11 PLIP interactions:9 interactions with chain W, 1 interactions with chain P, 1 interactions with chain V- Hydrophobic interactions: W:W.453, W:W.453, W:A.474, W:F.481, W:F.486, P:L.17
- Hydrogen bonds: W:K.461, W:K.461, W:T.467, V:R.239
- Salt bridges: W:K.461
PGV.95: 17 residues within 4Å:- Chain 9: G.6
- Chain W: F.530, N.587, W.591, W.594, F.595, F.598
- Ligands: UNL.96, UNL.132, UNL.133
- Chain a: V.30, G.33, F.34, A.37, F.40, T.41, Q.44
11 PLIP interactions:7 interactions with chain W, 4 interactions with chain a- Hydrophobic interactions: W:F.530, W:W.591, W:W.591, W:W.594, W:F.595, W:F.598, a:V.30, a:V.30, a:F.34, a:F.40
- Hydrogen bonds: W:N.587
PGV.105: 15 residues within 4Å:- Chain 1: E.7, T.10
- Chain V: K.44, W.63, I.64, G.65
- Chain Z: R.9, T.10, V.13, T.16, L.17, L.20
- Ligands: PGV.79, BCL.103, PGV.106
12 PLIP interactions:2 interactions with chain 1, 7 interactions with chain Z, 3 interactions with chain V- Hydrogen bonds: 1:E.7, 1:T.10, V:K.44, V:K.44, V:W.63
- Hydrophobic interactions: Z:R.9, Z:T.10, Z:V.13, Z:L.17, Z:L.20
- Salt bridges: Z:R.9, Z:R.9
PGV.106: 14 residues within 4Å:- Chain X: R.9, L.17
- Chain Z: R.4, P.5, F.6, E.7, T.10, V.14, L.18, V.21
- Ligands: PGV.79, UNL.81, BCL.97, PGV.105
9 PLIP interactions:6 interactions with chain Z, 3 interactions with chain X- Hydrophobic interactions: Z:V.14, Z:L.18, Z:V.21, X:L.17
- Hydrogen bonds: Z:E.7, Z:E.7, Z:T.10, X:R.9
- Salt bridges: X:R.9
- 17 x UNL: UNKNOWN LIGAND(Non-functional Binders)
UNL.42: 5 residues within 4Å:- Chain M: V.33, W.41
- Ligands: UNL.43, BCL.122, UNL.125
Ligand excluded by PLIPUNL.43: 7 residues within 4Å:- Chain M: I.36, A.37, W.40, W.41, Y.44
- Ligands: UNL.42, UNL.125
Ligand excluded by PLIPUNL.60: 4 residues within 4Å:- Chain R: V.13, V.14, L.17
- Ligands: UNL.61
Ligand excluded by PLIPUNL.61: 2 residues within 4Å:- Chain R: R.9
- Ligands: UNL.60
Ligand excluded by PLIPUNL.62: 6 residues within 4Å:- Chain R: R.9
- Chain T: T.10, V.14, L.18
- Ligands: UNL.132, UNL.133
Ligand excluded by PLIPUNL.64: 3 residues within 4Å:- Chain R: F.6, T.10
- Ligands: PGV.94
Ligand excluded by PLIPUNL.81: 7 residues within 4Å:- Chain V: R.66
- Chain W: W.581
- Ligands: PGV.79, PGV.106
- Chain a: I.35, A.38, R.39
Ligand excluded by PLIPUNL.82: 4 residues within 4Å:- Chain 8: W.3
- Ligands: PGV.38, BGL.85, UNL.86
Ligand excluded by PLIPUNL.86: 4 residues within 4Å:- Ligands: PGV.38, UNL.82, BGL.84, BGL.85
Ligand excluded by PLIPUNL.88: 4 residues within 4Å:- Chain V: F.298
- Ligands: LMT.6, BGL.11, BGL.84
Ligand excluded by PLIPUNL.96: 4 residues within 4Å:- Chain W: W.594, F.598
- Ligands: PGV.95, UNL.133
Ligand excluded by PLIPUNL.124: 5 residues within 4Å:- Chain 5: W.38, R.40
- Chain 8: N.2, V.5, F.8
Ligand excluded by PLIPUNL.125: 8 residues within 4Å:- Chain 5: H.27, L.31, W.38, L.39
- Chain 7: M.6
- Ligands: UNL.42, UNL.43, BCL.122
Ligand excluded by PLIPUNL.126: 4 residues within 4Å:- Chain 5: F.28, W.38
- Chain 8: V.5
- Ligands: BGL.87
Ligand excluded by PLIPUNL.130: 3 residues within 4Å:- Chain 8: Y.26
- Ligands: PEF.89, BGL.129
Ligand excluded by PLIPUNL.132: 8 residues within 4Å:- Chain T: V.13, L.17
- Ligands: UNL.62, PGV.95, BGL.99, UNL.133
- Chain a: I.36, F.40
Ligand excluded by PLIPUNL.133: 4 residues within 4Å:- Ligands: UNL.62, PGV.95, UNL.96, UNL.132
Ligand excluded by PLIP- 3 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.75: 24 residues within 4Å:- Chain V: I.80, G.83, V.84, A.132, F.136, W.139, Q.143, V.156, A.159, F.160, W.167, L.187, G.271, V.275
- Chain W: L.533, L.537, M.541, W.575, V.578, M.579
- Ligands: BCL.73, BCL.74, PGV.79, MQE.93
12 PLIP interactions:11 interactions with chain V, 1 interactions with chain W- Hydrophobic interactions: V:I.80, V:I.80, V:I.80, V:A.132, V:F.136, V:A.159, V:F.160, V:W.167, V:L.187, V:V.275, W:L.537
- Hydrogen bonds: V:Q.143
BPH.77: 17 residues within 4Å:- Chain V: F.220, T.223, L.224, H.227, M.228
- Chain W: I.373, F.383, W.452, L.456, L.469, G.472, F.473, A.476, A.596, A.600
- Ligands: BCL.90, BPH.91
7 PLIP interactions:7 interactions with chain W- Hydrophobic interactions: W:I.373, W:F.383, W:F.383, W:F.473, W:A.476, W:A.600
- pi-Stacking: W:F.473
BPH.91: 18 residues within 4Å:- Chain V: F.207, A.213, I.216, T.217, F.220, A.221, L.224
- Chain W: L.445, Y.484, P.498, F.502, I.505, L.506, W.508, T.509
- Ligands: PGV.39, BPH.77, BCL.90
7 PLIP interactions:3 interactions with chain V, 4 interactions with chain W- Hydrophobic interactions: V:F.207, V:T.217, V:L.224, W:L.445, W:P.498, W:L.506, W:W.508
- 2 x MQE: 2-methyl-3-[(2E,6E,10E,14E,18E,22E,26E,30E,34E,38E)-3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,1 4,18,22,26,30,34,38,42-undecaen-1-yl]naphthalene-1,4-dione(Non-covalent)
MQE.76: 17 residues within 4Å:- Chain 8: L.14, F.17, L.24
- Chain V: F.225, M.228, H.229, A.232, I.246, H.247, W.250, Y.256, S.257, I.258, G.259, I.263, V.266, F.277
15 PLIP interactions:12 interactions with chain V, 3 interactions with chain 8- Hydrophobic interactions: V:F.225, V:M.228, V:I.246, V:W.250, V:Y.256, V:I.258, V:I.258, V:I.263, V:V.266, V:F.277, 8:F.17, 8:F.17, 8:L.24
- Hydrogen bonds: V:I.258
- pi-Stacking: V:W.250
MQE.93: 28 residues within 4Å:- Chain 1: V.13, T.16, L.17
- Chain 3: V.21
- Chain V: F.60, F.67, V.69, G.73, A.74, I.75, I.77, W.139, R.142
- Chain W: H.542, T.545, T.568, Q.572, W.575, M.579, W.581, N.582, A.583, N.584, I.588, W.591
- Ligands: BPH.75, PGV.79
- Chain a: F.34
26 PLIP interactions:9 interactions with chain W, 11 interactions with chain V, 1 interactions with chain 3, 1 interactions with chain a, 4 interactions with chain 1- Hydrophobic interactions: W:T.545, W:T.568, W:Q.572, W:W.575, W:W.581, W:W.581, W:I.588, W:W.591, V:F.60, V:F.67, V:F.67, V:F.67, V:V.69, V:V.69, V:A.74, V:I.75, V:I.77, V:I.77, V:W.139, 3:V.21, a:F.34, 1:V.13, 1:T.16, 1:L.17, 1:L.17
- Hydrogen bonds: W:A.583
- 1 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)
PEF.89: 11 residues within 4Å:- Chain 8: L.18, V.22, Y.26
- Chain V: L.140, M.154, P.157, I.158, G.161, I.168
- Ligands: BGL.83, UNL.130
6 PLIP interactions:3 interactions with chain V, 3 interactions with chain 8- Hydrophobic interactions: V:L.140, V:M.154, 8:L.18
- Hydrogen bonds: V:M.154, 8:Y.26, 8:Y.26
- 1 x MN: MANGANESE (II) ION(Non-covalent)
MN.92: 5 residues within 4Å:- Chain V: H.229, H.264
- Chain W: H.542, E.557, H.589
5 PLIP interactions:3 interactions with chain W, 2 interactions with chain V- Metal complexes: W:H.542, W:E.557, W:H.589, V:H.229, V:H.264
- 1 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.131: 5 residues within 4Å:- Chain W: M.526, L.527
- Ligands: BCL.73
- Chain a: C.23, L.27
1 PLIP interactions:1 interactions with chain W- Hydrophobic interactions: W:L.527
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Qi, C.H. et al., New insights on the photocomplex of Roseiflexus castenholzii revealed from comparisons of native and carotenoid-depleted complexes. J.Biol.Chem. (2023)
- Release Date
- 2023-11-22
- Peptides
- Antenna complex alpha/beta subunit: ACEGILOQSUY0246
Alpha subunit of light-harvesting 1: BDFHJKNPRTXZ135
Cytochrome subunit of photosynthetic reaction center: M
Reaction center protein L chain: VW
TMx polypeptide: 7
reaction center small polypeptide: 8
reaction center unknown polypeptide: 9
reaction center small polypeptide: a - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
0C
2E
4G
6I
8L
BO
EQ
GS
IU
KY
O0
Q2
S4
U6
WB
1D
3F
5H
7J
9K
AN
DP
FR
HT
JX
NZ
P1
R3
T5
VM
CV
LW
M7
X8
Y9
Za
h - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-15-15-1-2-1-1-1-1-mer
- Ligands
- 48 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 14 x U42: [(2~{R},3~{S},4~{S},5~{R},6~{R})-6-[(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E})-2,6,10,14,19,23-hexamethyl-25-(2,6,6-trimethylcyclohexen-1-yl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl pentadecanoate(Non-covalent)
- 16 x U4Z: gamma-Carotene(Non-covalent)
- 3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 13 x BGL: 2-O-octyl-beta-D-glucopyranose(Non-covalent)
- 4 x HEC: HEME C(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 9 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)
- 17 x UNL: UNKNOWN LIGAND(Non-functional Binders)
- 3 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
- 2 x MQE: 2-methyl-3-[(2E,6E,10E,14E,18E,22E,26E,30E,34E,38E)-3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,1 4,18,22,26,30,34,38,42-undecaen-1-yl]naphthalene-1,4-dione(Non-covalent)
- 1 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Qi, C.H. et al., New insights on the photocomplex of Roseiflexus castenholzii revealed from comparisons of native and carotenoid-depleted complexes. J.Biol.Chem. (2023)
- Release Date
- 2023-11-22
- Peptides
- Antenna complex alpha/beta subunit: ACEGILOQSUY0246
Alpha subunit of light-harvesting 1: BDFHJKNPRTXZ135
Cytochrome subunit of photosynthetic reaction center: M
Reaction center protein L chain: VW
TMx polypeptide: 7
reaction center small polypeptide: 8
reaction center unknown polypeptide: 9
reaction center small polypeptide: a - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
0C
2E
4G
6I
8L
BO
EQ
GS
IU
KY
O0
Q2
S4
U6
WB
1D
3F
5H
7J
9K
AN
DP
FR
HT
JX
NZ
P1
R3
T5
VM
CV
LW
M7
X8
Y9
Za
h - Membrane
-
We predict this structure to be a membrane protein.