SMTL ID : 5yq7.1

Cryo-EM structure of the RC-LH core complex from Roseiflexus castenholzii

BCL.1: 13 residues within 4Å: Chain A: G.36, L.37, H.44, W.53 Chain Z: I.26, H.27, F.36 Ligands: BCL.3, BCL.29, KGD.54, BCL.56, KGD.57, BCL.58 5 PLIP interactions: 2 interactions with chain Z, 3 interactions with chain A, Hydrophobic interactions: Z:I.26, Z:F.36, A:W.53 pi-Stacking: A:W.53 Metal complexes: A:H.44 BCL.2: 11 residues within 4Å: Chain A: W.14, H.26, V.29, V.30, I.33, Y.34 Chain B: A.43 Chain Z: S.11 Ligands: BCL.3, BCL.58, KGD.59 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A, Hydrophobic interactions: B:A.43, A:W.14, A:V.30 Metal complexes: A:H.26 BCL.3: 16 residues within 4Å: Chain 0: A.23, H.27, F.36 Chain A: I.33 Chain B: G.36, L.37, A.40, H.44, C.47, W.53 Ligands: BCL.1, BCL.2, BCL.4, KGD.57, BCL.58, BCL.61 10 PLIP interactions: 1 interactions with chain A, 7 interactions with chain B, 2 interactions with chain 0, Hydrophobic interactions: A:I.33, B:W.53, B:W.53, B:W.53, B:W.53, 0:F.36, 0:F.36 pi-Stacking: B:W.53, B:W.53 Metal complexes: B:H.44 BCL.4: 15 residues within 4Å: Chain 0: F.8, S.11 Chain B: W.14, H.26, V.29, V.30, I.33, Y.34, L.37 Chain C: L.24, I.39 Ligands: BCL.3, BCL.5, KGD.60, BCL.61 9 PLIP interactions: 6 interactions with chain B, 2 interactions with chain C, 1 interactions with chain 0, Hydrophobic interactions: B:W.14, B:V.30, B:V.30, B:L.37, C:L.24, C:I.39, 0:F.8 pi-Stacking: B:H.26 Metal complexes: B:H.26 BCL.5: 15 residues within 4Å: Chain 1: A.23, I.26, H.27, F.36 Chain C: I.33, G.36, L.37, A.40, H.44, C.47, W.53 Ligands: BCL.4, KGD.59, BCL.61, BCL.62 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain 1, Hydrophobic interactions: C:I.33, C:W.53, C:W.53, C:W.53, C:W.53, 1:I.26, 1:F.36 pi-Stacking: C:W.53, C:W.53 Metal complexes: C:H.44 BCL.6: 15 residues within 4Å: Chain 1: F.8, S.11 Chain C: P.11, W.14, H.26, V.29, V.30, I.33, Y.34 Chain E: L.24, A.43 Ligands: BCL.12, KGD.60, BCL.62, KGD.63 7 PLIP interactions: 2 interactions with chain E, 1 interactions with chain 1, 4 interactions with chain C, Hydrophobic interactions: E:L.24, E:A.43, 1:F.8, C:P.11, C:W.14, C:V.30 Metal complexes: C:H.26 BCL.7: 14 residues within 4Å: Chain 8: M.191, I.194, F.195, L.198, G.199, L.202 Chain D: W.167, F.185, H.192, L.193, V.196 Ligands: BCL.8, BPH.9, BCL.70 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain 8, Hydrophobic interactions: D:W.167, D:F.185, D:L.193, D:V.196, 8:I.194, 8:F.195, 8:L.202 Metal complexes: D:H.192 BCL.8: 18 residues within 4Å: Chain 8: Y.185 Chain D: F.136, V.163, L.170, I.199, G.200, F.206, F.207, H.212, I.216, V.275, S.278, N.279, I.282 Ligands: BCL.7, BPH.9, BCL.70, BPH.71 8 PLIP interactions: 8 interactions with chain D, Hydrophobic interactions: D:F.136, D:I.199, D:F.206, D:F.206, D:F.207, D:I.216, D:I.282 Metal complexes: D:H.212 BCL.12: 15 residues within 4Å: Chain 2: A.23, I.26, H.27, F.36 Chain E: G.36, L.37, H.44, W.53 Ligands: BCL.6, BCL.13, BCL.14, KGD.60, BCL.62, KGD.63, BCL.64 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain 2, Hydrophobic interactions: E:W.53, E:W.53, 2:I.26, 2:F.36 Metal complexes: E:H.44 BCL.13: 13 residues within 4Å: Chain 2: F.8 Chain E: P.11, W.14, H.26, V.29, V.30, I.33 Chain F: I.39, A.43 Ligands: BCL.12, BCL.14, BCL.64, KGD.65 7 PLIP interactions: 2 interactions with chain F, 3 interactions with chain E, 2 interactions with chain 2, Hydrophobic interactions: F:I.39, F:A.43, E:P.11, 2:F.8, 2:F.8 Salt bridges: E:H.26 Metal complexes: E:H.26 BCL.14: 14 residues within 4Å: Chain 3: A.23, I.26, H.27 Chain E: L.37 Chain F: L.37, H.44, W.53 Ligands: BCL.12, BCL.13, BCL.15, KGD.63, BCL.64, KGD.65, BCL.66 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E, Metal complexes: F:H.44 Hydrophobic interactions: E:L.37 BCL.15: 13 residues within 4Å: Chain 3: E.7, F.8, S.11 Chain F: W.14, H.26, V.29, V.30, I.33, Y.34 Chain G: I.39 Ligands: BCL.14, BCL.16, KGD.67 5 PLIP interactions: 1 interactions with chain 3, 3 interactions with chain F, 1 interactions with chain G, Hydrophobic interactions: 3:F.8, F:W.14, G:I.39 Salt bridges: F:H.26 Metal complexes: F:H.26 BCL.16: 13 residues within 4Å: Chain 4: A.23, I.26, H.27, V.30 Chain G: G.36, H.44, C.47, W.53 Ligands: BCL.15, KGD.65, BCL.66, KGD.67, BCL.68 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain 4, Hydrophobic interactions: G:W.53, 4:V.30 Metal complexes: G:H.44 BCL.17: 9 residues within 4Å: Chain 4: S.11 Chain G: W.14, H.26, V.29, V.30, I.33, Y.34 Ligands: BCL.18, BCL.68 3 PLIP interactions: 3 interactions with chain G, Hydrophobic interactions: G:W.14, G:V.30 Metal complexes: G:H.26 BCL.18: 12 residues within 4Å: Chain 5: M.22, A.23, I.26, H.27 Chain H: G.36, H.44, W.53 Chain J: W.41, I.42 Ligands: BCL.17, KGD.67, BCL.68 8 PLIP interactions: 5 interactions with chain H, 2 interactions with chain J, 1 interactions with chain 5, Hydrophobic interactions: H:W.53, H:W.53, H:W.53, J:W.41, J:I.42, 5:I.26 pi-Stacking: H:W.53 Metal complexes: H:H.44 BCL.19: 8 residues within 4Å: Chain 5: S.11 Chain H: W.14, H.26, V.29, V.30, I.33, Y.34, L.37 4 PLIP interactions: 4 interactions with chain H, Hydrophobic interactions: H:W.14, H:L.37 Salt bridges: H:H.26 Metal complexes: H:H.26 BCL.20: 14 residues within 4Å: Chain I: G.36, L.37, H.44, C.47, W.53 Chain W: A.23, I.26, H.27, F.36 Ligands: BCL.41, BCL.42, KGD.48, BCL.51, BCL.52 7 PLIP interactions: 5 interactions with chain I, 2 interactions with chain W, Hydrophobic interactions: I:W.53, I:W.53, I:W.53, W:I.26, W:F.36 pi-Stacking: I:W.53 Metal complexes: I:H.44 BCL.21: 10 residues within 4Å: Chain I: P.11, W.14, H.26, V.29, V.30, I.33 Chain W: F.8, S.11 Ligands: BCL.26, KGD.53 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain W, Hydrophobic interactions: I:W.14, I:V.30, W:F.8 Metal complexes: I:H.26 BCL.26: 14 residues within 4Å: Chain K: G.36, H.44, C.47, W.53 Chain X: A.23, I.26, H.27, V.30 Ligands: BCL.21, BCL.28, KGD.50, BCL.52, KGD.53, BCL.55 6 PLIP interactions: 2 interactions with chain X, 4 interactions with chain K, Hydrophobic interactions: X:I.26, X:V.30, K:W.53, K:W.53, K:W.53 Metal complexes: K:H.44 BCL.27: 11 residues within 4Å: Chain K: P.11, W.14, H.26, V.29, V.30, I.33, L.37 Chain L: A.43 Chain X: S.11 Ligands: BCL.28, KGD.54 5 PLIP interactions: 4 interactions with chain K, 1 interactions with chain L, Hydrophobic interactions: K:W.14, K:V.30, K:L.37, L:A.43 Metal complexes: K:H.26 BCL.28: 15 residues within 4Å: Chain L: I.33, G.36, L.37, H.44, C.47, W.53 Chain Y: A.23, H.27 Ligands: BCL.26, BCL.27, BCL.29, KGD.53, KGD.54, BCL.55, BCL.56 6 PLIP interactions: 5 interactions with chain L, 1 interactions with chain Y, Hydrophobic interactions: L:I.33, L:W.53, Y:H.27 pi-Stacking: L:W.53 Metal complexes: L:H.44, L:H.44 BCL.29: 11 residues within 4Å: Chain L: W.14, H.26, V.29, V.30, I.33 Chain Y: F.8, S.11 Ligands: BCL.1, BCL.28, KGD.54, KGD.57 5 PLIP interactions: 3 interactions with chain L, 2 interactions with chain Y, Hydrophobic interactions: L:W.14, L:V.30, Y:F.8, Y:F.8 Metal complexes: L:H.26 BCL.30: 16 residues within 4Å: Chain 7: X.9 Chain M: G.36, L.37, A.40, H.44, W.53 Chain O: W.38 Chain S: A.23, I.26, H.27, V.30 Ligands: BCL.31, BCL.32, KGD.34, BCL.36, BCL.43 8 PLIP interactions: 3 interactions with chain S, 4 interactions with chain M, 1 interactions with chain O, Hydrophobic interactions: S:I.26, S:H.27, S:V.30, M:W.53, M:W.53, M:W.53, O:W.38 Metal complexes: M:H.44 BCL.31: 12 residues within 4Å: Chain M: W.14, H.26, V.29, V.30, I.33 Chain N: L.24, I.39, A.43 Chain S: F.6 Ligands: BCL.30, BCL.32, KGD.35 8 PLIP interactions: 3 interactions with chain N, 1 interactions with chain S, 4 interactions with chain M, Hydrophobic interactions: N:L.24, N:I.39, N:A.43, S:F.6, M:W.14, M:W.14, M:V.30 Metal complexes: M:H.26 BCL.32: 15 residues within 4Å: Chain N: T.32, G.36, L.37, A.40, H.44, W.53 Chain O: A.23, I.26, H.27, F.36 Ligands: BCL.30, BCL.31, KGD.34, BCL.36, BCL.45 10 PLIP interactions: 7 interactions with chain N, 3 interactions with chain O, Hydrophobic interactions: N:T.32, N:A.40, N:W.53, N:W.53, N:W.53, O:I.26, O:F.36 pi-Stacking: N:W.53 Metal complexes: N:H.44 Hydrogen bonds: O:H.27 BCL.33: 10 residues within 4Å: Chain N: P.11, W.14, H.26, V.29, V.30, I.33 Chain O: F.8, S.11 Ligands: BCL.37, KGD.44 4 PLIP interactions: 1 interactions with chain O, 3 interactions with chain N, Hydrophobic interactions: O:F.8, N:W.14 Salt bridges: N:H.26 Metal complexes: N:H.26 BCL.36: 13 residues within 4Å: Chain D: F.55 Chain N: A.40, H.44 Chain O: V.13, T.16, L.20, H.27, W.38 Chain S: V.14 Ligands: BCL.30, BCL.32, KGD.34, KGD.35 7 PLIP interactions: 5 interactions with chain O, 1 interactions with chain S, 1 interactions with chain D, Hydrophobic interactions: O:L.20, O:W.38, O:W.38, O:W.38, S:V.14, D:F.55 Metal complexes: O:H.27 BCL.37: 14 residues within 4Å: Chain N: I.33 Chain P: G.36, L.37, H.44, C.47, W.53 Chain T: A.23, I.26, H.27 Ligands: BCL.33, KGD.35, KGD.44, BCL.45, BCL.46 7 PLIP interactions: 3 interactions with chain T, 4 interactions with chain P, Hydrophobic interactions: T:I.26, T:I.26, P:W.53, P:W.53, P:W.53 Hydrogen bonds: T:H.27 Metal complexes: P:H.44 BCL.38: 12 residues within 4Å: Chain P: W.14, H.26, V.29, V.30, I.33, Y.34 Chain Q: A.43 Chain T: S.11 Ligands: BCL.39, KGD.44, BCL.46, KGD.47 3 PLIP interactions: 2 interactions with chain P, 1 interactions with chain Q, Hydrophobic interactions: P:W.14, Q:A.43 Metal complexes: P:H.26 BCL.39: 14 residues within 4Å: Chain Q: T.32, G.36, L.37, H.44, C.47, W.53 Chain U: A.23, I.26, H.27 Ligands: BCL.38, BCL.41, KGD.44, BCL.46, BCL.49 7 PLIP interactions: 6 interactions with chain Q, 1 interactions with chain U, Hydrophobic interactions: Q:T.32, Q:W.53, Q:W.53, Q:W.53, U:I.26 Metal complexes: Q:H.44, Q:H.44 BCL.40: 14 residues within 4Å: Chain Q: P.11, W.14, H.26, V.29, V.30, I.33, L.37 Chain R: I.39 Chain U: E.7, F.8, S.11 Ligands: BCL.41, KGD.48, BCL.49 6 PLIP interactions: 4 interactions with chain Q, 1 interactions with chain R, 1 interactions with chain U, Hydrophobic interactions: Q:P.11, Q:L.37, R:I.39, U:F.8 Salt bridges: Q:H.26 Metal complexes: Q:H.26 BCL.41: 17 residues within 4Å: Chain Q: I.33 Chain R: G.36, L.37, H.44, C.47, W.53 Chain V: A.23, I.26, H.27, F.36 Ligands: BCL.20, BCL.39, BCL.40, KGD.47, KGD.48, BCL.49, BCL.51 8 PLIP interactions: 2 interactions with chain V, 5 interactions with chain R, 1 interactions with chain Q, Hydrophobic interactions: V:I.26, V:F.36, R:W.53, R:W.53, R:W.53, Q:I.33 pi-Stacking: R:W.53 Metal complexes: R:H.44 BCL.42: 10 residues within 4Å: Chain I: L.24 Chain R: P.11, W.14, H.26, V.30, I.33 Chain V: F.8 Ligands: BCL.20, KGD.50, BCL.51 6 PLIP interactions: 4 interactions with chain R, 1 interactions with chain I, 1 interactions with chain V, Hydrophobic interactions: R:P.11, R:W.14, R:W.14, I:L.24, V:F.8 Metal complexes: R:H.26 BCL.43: 8 residues within 4Å: Chain 7: X.17, X.20 Chain M: H.44 Chain S: T.16, H.27, W.38 Ligands: BCL.30, KGD.34 4 PLIP interactions: 4 interactions with chain S, Hydrophobic interactions: S:W.38, S:W.38, S:W.38 Metal complexes: S:H.27 BCL.45: 17 residues within 4Å: Chain D: A.74, I.78 Chain N: W.53 Chain O: L.18 Chain P: G.36, A.40, H.44 Chain T: T.16, L.20, A.23, H.27, V.30, W.38 Ligands: BCL.32, KGD.35, BCL.37, KGD.44 8 PLIP interactions: 6 interactions with chain T, 2 interactions with chain D, Hydrophobic interactions: T:T.16, T:L.20, T:V.30, T:W.38, T:W.38, D:A.74, D:I.78 Metal complexes: T:H.27 BCL.46: 14 residues within 4Å: Chain Q: A.40, H.44, C.47 Chain T: F.6 Chain U: T.16, L.20, A.23, H.27, W.38 Ligands: BCL.37, BCL.38, BCL.39, KGD.44, KGD.47 5 PLIP interactions: 4 interactions with chain U, 1 interactions with chain T, Hydrophobic interactions: U:T.16, U:L.20, U:W.38, T:F.6 Metal complexes: U:H.27 BCL.49: 15 residues within 4Å: Chain Q: W.53 Chain R: I.39, H.44 Chain U: F.6, S.15 Chain V: V.13, L.20, A.23, H.27, W.38 Ligands: BCL.39, BCL.40, BCL.41, KGD.47, KGD.48 5 PLIP interactions: 2 interactions with chain V, 2 interactions with chain U, 1 interactions with chain Q, Hydrophobic interactions: V:L.20, U:F.6, U:F.6, Q:W.53 Metal complexes: V:H.27 BCL.51: 14 residues within 4Å: Chain I: I.39, A.40, H.44 Chain V: V.14 Chain W: V.13, L.20, A.23, H.27, W.38 Ligands: BCL.20, BCL.41, BCL.42, KGD.48, KGD.50 4 PLIP interactions: 3 interactions with chain W, 1 interactions with chain V, Hydrophobic interactions: W:V.13, W:L.20, V:V.14 Metal complexes: W:H.27 BCL.52: 14 residues within 4Å: