SMTL ID : 8jvj.1

Structure of human TRPV4 with antagonist A2 and RhoA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x F9M: [6-[[4-(2,4-dimethyl-1,3-thiazol-5-yl)-1,3-thiazol-2-yl]amino]pyridin-3-yl]-[(1~{S},5~{R})-3-[5-(trifluoromethyl)pyrimidin-2-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone(Non-covalent)

F9M.1: 12 residues within 4Å: Chain A: R.464, K.465, F.466, V.469, S.470, N.474, Y.591, D.743, I.744, S.747, F.748, F.756 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.466, A:F.748, A:F.756 Hydrogen bonds: A:S.470, A:N.474 Halogen bonds: A:R.464 F9M.2: 11 residues within 4Å: Chain B: R.464, K.465, V.469, S.470, N.474, T.740, D.743, I.744, S.747, F.748, F.756 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:D.743, B:I.744, B:F.748, B:F.748, B:F.756 Hydrogen bonds: B:N.474, B:N.474 Halogen bonds: B:R.464 F9M.3: 12 residues within 4Å: Chain C: R.464, K.465, V.469, S.470, N.474, T.527, D.546, Y.591, D.743, I.744, S.747, F.748 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:T.527, C:F.748 Hydrogen bonds: C:S.470, C:N.474 Halogen bonds: C:R.464 F9M.4: 14 residues within 4Å: Chain D: R.464, K.465, F.466, V.469, S.470, N.474, T.527, Y.591, T.740, D.743, I.744, S.747, F.748, F.756 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:F.466, D:T.527, D:Y.591, D:T.740, D:F.748, D:F.748, D:F.756 Hydrogen bonds: D:N.474 Halogen bonds: D:R.464

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, J. et al., Structural Pharmacology of TRPV4 Antagonists. Adv Sci (2024)

Release Date

2024-05-08

Peptides

Transient receptor potential cation channel subfamily V member 4,3C-GFP: ABCD
Transforming protein RhoA: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily V member 4,3C-GFP

Transforming protein RhoA

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