SMTL ID : 8k5n.1

Discovery of Novel PD-L1 Inhibitors That Induce Dimerization and Degradation of PD-L1 Based on Fragment Coupling Strategy

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x I7M: 3-[(1~{S})-1-[6-methoxy-3-methyl-5-[[[(2~{S})-5-oxidanylidenepyrrolidin-2-yl]methylamino]methyl]pyridin-2-yl]oxy-2,3-dihydro-1~{H}-inden-4-yl]-2-methyl-~{N}-[5-[[[(2~{S})-5-oxidanylidenepyrrolidin-2-yl]methylamino]methyl]pyridin-2-yl]benzamide

I7M.1: 25 residues within 4Å: Chain A: F.2, T.3, I.37, Y.39, M.98, I.99, S.100, A.104, D.105, Y.106, K.107 Chain B: F.2, T.3, I.37, Y.39, N.46, Q.49, V.51, M.98, I.99, S.100, A.104, D.105, Y.106, K.107 18 PLIP interactions: 8 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:I.37, A:Y.39, A:M.98, A:A.104, B:I.37, B:Y.39, B:V.51, B:M.98, B:A.104 Hydrogen bonds: A:D.105, A:D.105, A:K.107, B:D.105, B:D.105, B:Y.106, B:K.107 pi-Stacking: A:Y.39, B:Y.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K. et al., Discovery of Novel PD-L1 Inhibitors That Induce the Dimerization, Internalization, and Degradation of PD-L1 Based on the Fragment Coupling Strategy. J.Med.Chem. (2023)

Release Date

2024-01-03

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

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